Daucus carota (carrot): 108214312
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Entry
108214312 CDS
T05350
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108214312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108214312
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108214312
Hops complex
108214312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8
zf-rbx1
RPN1_RPN2_N
zf-RING_UBOX
zf-C3HC4
zf_RING_Vps8_fungal
zf-RING_2
zf-ANAPC11
Nup54_57_C
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
108214312
NCBI-ProteinID:
XP_063944792
LinkDB
All DBs
Position
3:complement(10196684..10217044)
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AA seq
993 aa
AA seq
DB search
MQYMEAGRQVFTVDLLERFAAKGHGVITCMAAGNDVIVLGTSKGWVIRHDFGVGHSSDID
LSAGVGRPGEQSIHSVFVDPGGCHCIATVVGNGGADTFYMHAKWTKPRILNKMKGLVVNA
VAWNRQQITEASTREVILGTDNGQLHEFAVDEKDKREKYIKFLFELAELPEAFKDLQMET
ASTSSGTRYYVMAVTPTRLYSFTGIGLLETVFASYTDRAVHFMELPGDIPNSELHFFIKQ
RRAVHFAWLSGAGIYHGGLNFGAQHSSPNGDQNFVENKALLDYSKLIEGAGATKPSSLAV
SEYHFLLLIGNKVKVVNRISEQIVEELHFDQTSEAASRGILGLCSDASAGLFYTYDQNSI
FQVSVNDEGRDMWKVYLDLKLYAAALENCRDPFQRDQVYLEQAEVAFSAKDFVRAASFYA
KINYILSFEEITLKFISIGEQDSLRTFLLRKLDNLDKADKCQITMISTWTTELYLDKINR
LLLEDDTTTESRSPEYQSIVKEFRAFLSDSKDVLDEATTMKLLESYGRVDELVYFANLKE
QYEIVIHHYIQQGEAKKALQVLQKPSVPVDLQYKFAPELIMLDAYETVESWMITKNLNPR
KLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLQNEDPGAHNLLLSLYAKQEDESSLLRF
LQCKFGKGRPNGPDFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELA
MAEADKVEDDEDLRKKLWLMVAKHVVEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFF
PDFALIDDFKEAICSSLEDYNQQIEKLKEEMNDATHGADNIRNDISALAQRYTVIERDEE
CGVCRRKILTAGGDHQVRGYSSVGPMAPFYVFPCGHAFHAQCLIAHVTRCTDRTQAELIL
ELQKQLTLLGNEPKENVNGGLTRNETITSMISPVDKIRSQLDDAVASECPFCGDLMIQEI
SLPFILPEEALQFSSWEIKPQNMVGQKSLSING
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcagtatatggaggccggaaggcaagtttttacggtagatcttctcgaaagatttgca
gccaaaggacatggagttatcacttgtatggcggccgggaatgatgtcattgtgttagga
actagtaaaggttgggttattagacacgatttcggagttggacattcttccgatattgat
ctgtctgcgggtgtgggtcgacctggtgaacaatctatccacagcgtttttgttgatccc
gggggctgccactgcattgccactgttgtgggcaatggaggtgctgatacattttacatg
catgcaaaatggaccaaaccacgaattttaaacaaaatgaaaggtttggtggttaatgct
gttgcctggaatagacagcagataacagaagcttcgacgagggaggtaattcttgggact
gataatggccaattgcatgaatttgctgttgatgagaaagataaaagggaaaagtatata
aagtttctttttgaacttgccgaattaccagaagctttcaaagatctacagatggaaaca
gctagcacaagcagtggaactagatattatgtgatggctgttacccctacacgactctat
tccttcacagggataggattactggaaaccgtctttgcgagctatacagatcgtgctgtt
cattttatggaacttcctggagatataccgaacagtgagcttcatttctttatcaagcag
agacgagcagtacattttgcatggctttctggagctggtatctaccatggtgggctaaat
tttggggcacaacatagttcacccaatggggaccaaaactttgtggagaacaaggctctt
ttagattactcaaagctgattgaaggtgctggggccactaaacctagttctcttgctgtt
tctgaatatcactttctgctgcttattgggaataaggttaaggtagtaaatcgtattagt
gaacaaattgtggaagaacttcattttgatcaaacatcagaagcagcatcaaggggtata
cttggattgtgtagtgatgcctctgctggattgttctacacatatgatcagaactcgatc
tttcaggtctctgtgaatgatgaaggccgagatatgtggaaggtatatctggacttgaag
ttgtatgctgcagctttggaaaattgtcgcgatccatttcaacgagaccaagtctatcta
gagcaagctgaagttgctttttctgctaaggattttgtcagggcagcatctttctatgca
aaaatcaattacatattgtctttcgaagagatcacattgaagtttattagcattggtgaa
caggattctctgagaactttcctgttacgaaagcttgacaatcttgataaagctgataaa
tgtcaaatcactatgatttcaacatggacaactgaattgtacttggacaagatcaataga
ttgctcctggaagatgacacgactaccgagagtcgtagtccagaatatcagtcgatcgta
aaggagtttcgtgcttttcttagtgactccaaggatgtgttggatgaggcaactacaatg
aagctattagaaagttatggtagagttgatgaattggtatattttgctaatctgaaggag
cagtacgagattgtaattcatcattatattcagcaaggtgaagcaaagaaagcattacaa
gtgcttcagaagccatctgttcctgttgatcttcagtacaagtttgcaccagagctcatc
atgcttgatgcgtatgaaactgttgagtcgtggatgatcaccaaaaatttgaatcccagg
aagctgattcctgccatgatgagatattcaagtgaaccacatgcaaagaatgaaacccat
gaagtaataaaatatttggaattttgtgtacatcgtttgcagaatgaggatcctggggct
cataacttgttgctttccttgtatgcgaagcaggaagatgaaagttccctgttgcggttc
ttgcaatgtaaatttggcaaggggcgaccgaatggccctgatttcttttatgatcctaaa
tatgcgctgcgcctttgcctcaaggagaaaaggatgcgtgcttgtgtacatatatatagc
atgatgtctatgcatgaagaagcagttgctcttgcacttcaggttgatccagagcttgct
atggctgaagctgacaaggtagaagatgacgaagacttgaggaaaaaattgtggcttatg
gttgccaagcatgttgttgagcaggagaagggaactaaaagagaaaatattcggaaggca
atagcattcttaaaggaaactgatgggttgttaaagatcgaagatattctgcctttcttt
cctgattttgccctgattgatgacttcaaggaggcaatttgttcatcattagaggattat
aaccagcagattgaaaaactgaaggaggaaatgaatgatgcgacccatggtgcagataac
atcagaaatgatattagtgctcttgctcaacgctatactgtaatcgaacgtgacgaggag
tgtggggtttgcaggaggaagattttgacagcaggtggggaccatcaggttaggggttat
tcatcggtagggccaatggcacctttctatgtcttcccatgtggacatgcattccatgcc
caatgcctaattgcccatgtgacaaggtgtacggaccgaacccaagcagaacttatactt
gaattacagaagcaacttactttactcggtaatgagccgaaggaaaatgttaatggtggc
ttaaccagaaatgaaacgataacaagcatgatatcaccagttgacaagataagatcacag
ttggatgatgctgttgctagtgagtgccctttttgcggtgatctgatgatccaggaaatt
tctttgccttttattctccctgaagaagcgctgcagttttcatcgtgggagataaagcca
caaaacatggttggtcagaagagtctatctatcaatggatga
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