Daucus carota (carrot): 108214364
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Entry
108214364 CDS
T05350
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcr03009
]
108214364
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108214364
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
90S particles
Helicases
108214364
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
nSTAND3
ATPase
AAA_RNF213_3
Sigma54_activat
AAA_19
Motif
Other DBs
NCBI-GeneID:
108214364
NCBI-ProteinID:
XP_017241812
LinkDB
All DBs
Position
3:60851941..60859613
Genome browser
AA seq
1331 aa
AA seq
DB search
MYTWDMETSVDLRDGDRDRDGLMSLNVNDSNTFMLPGKKNSAKKMKVSGYQKKKNRIPEP
SKSQKRKLKKLQEDKEKELLLSKSMETLEKYKIGDVAQSLMLSSKNLGQVETFQEKRRRE
VQFCKAGLQLPANNRPIKRKTYDCTSEFESETKKLHLTDVCNVSTFTYSLIGDKESKHDD
STILGSLVDDGRQLKAPVPTKETYHENSVIPVPSNDQNALPSTVSSLPKVEKNIDRRNEY
PTGHLGKISNLVNGNSAGVRAAPIVVHVSRPMEIENTRKDLPIVMMEQEIMEAINENISV
IICGETGCGKTTQVPQFLYEAGFGSSRSLVNSGMIGVTQPRRVAVLATAKRVAFELGLRL
GKEVGFQVRHDKRIGDNCSIKFMTDGILLRELQNDFLLRRYSVIILDEAHERSLNTDILI
GMLSRIIRERQRIYEEQKEQDLLFGKKTKPENKVYPLKLVLMSATLRVEDFVSNKKIFSE
PPPVIEVPARQYPVDIHFSKRTEIVDYVGQAYKKVLAIHKKLPPGGILVFVTGQREVEYL
CQKLRKASREMVKSNSRRIENAAAMLEGNFVEDHDMNEISEAFEIEGDSTLQQTDRFSSY
DDDYDDLSENESDASFDSDEDSDLEVSGKGGYLFNQKSLESDDVLGEDGNLASLKAAFDA
LAEKNTLASNTDGKLVATGKGSDQANLSSGENNGESDVPPASPMCVLPLYAMLPASAQLR
VFNEVKDGERLVVVATNVAETSLTIPGIKYVVDTGREKVKMYNSANGMETYEVQWISKAS
ASQRAGRAGRTGPGHCYRLYSSGAFSNKFFDFSDAEISKIPVDGVVLIMKSMGIDKVKNF
PFPTPPEDDGIDKAEKCLKFLEALDGNSRLTSLGKAMAHYPMSPRHSRMLLTVIQILLKS
KGYSRPNLVLSYAIAAAAALSLSNPFITQFEGNHDEKDETASSEKVLDKEEKLRKKRQKE
ASRASRAKFCNPTSDALSIAYALQCFELSDNPINFCTEYALHIKTMEEMSKLRKQLLKLV
FQQSLCNSQQDVSWTHGKMIDVESSWRDFSNNQHLSSAEEELLGQAICAGWVDRVARKTK
AYSDLSDGDKTFNSVRYEDCMREEIFFLHRRSSVSRSAPEYLVYNELVHTKRPYIYGATT
VKPDWLVRYASFNCTFSAPHTDPRPYYEPLSDQVLCWKTPSFGPRMWQLPLHRFPIEDNM
QRVTVFASSLIGGAVLPCLKSFQKFLAVTPATILRPESLGQKRVGNLLHKLQSRTKIIDS
CAMLRELWSENPEDLYPEILDMFQEGFYNQFEELWVEMHREVLLDPRRRFAKKGKKERSG
KKDTCRGKKSG
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgtatacctgggacatggagacttctgttgatttgagagacggggacagggacagggac
ggattaatgagtctaaatgtcaacgatagcaacactttcatgttgccaggaaagaagaac
agtgcaaaaaagatgaaggtctctggatatcagaagaagaagaacagaattcctgagcca
agcaagtcccagaaaagaaagctaaaaaaacttcaggaggacaaggagaaggaacttctc
ttatcaaaaagtatggagactttggagaagtacaaaattggagatgttgcacaatcactt
atgttgtcatcaaagaatctgggccaggttgaaacttttcaagagaaacgcaggagggaa
gtacaattttgtaaggctggacttcagttgccagctaataatcgaccaatcaagcgaaaa
acttatgattgtacctctgaatttgaatcagaaacaaaaaaactgcatttaacagatgtc
tgcaatgtcagtacctttacctattcattgataggtgacaaagaatcgaagcacgatgat
agtactattcttggcagccttgttgatgatggtagacaattaaaagcccccgtcccaact
aaagaaacttaccatgagaatagtgtgatcccagtgccatcaaatgatcagaatgcatta
cccagtactgtttctagtttgccaaaagtggaaaaaaatattgatagaagaaatgaatat
ccaacagggcatcttggcaaaatcagtaatctggtcaatgggaactcagctggagttcga
gctgcccctatagtagttcatgtgtcaagaccaatggagattgaaaatacaagaaaagac
cttccaattgtcatgatggaacaggagataatggaagctatcaatgaaaatattagtgtc
attatatgtggggagacaggttgtggtaagactacacaagtccctcagttcctttacgag
gctggctttggttcatcccggtcgttggtgaacagtggtatgattggtgttacccagcca
cgccgtgtcgcagtccttgcaactgcgaaaagggtggcatttgagcttggtctccgttta
ggtaaggaggtgggttttcaagtgcggcatgacaagagaattggtgacaattgctccatc
aagtttatgactgatgggatattgcttcgagaacttcagaatgattttttattaaggagg
tattcagtcattatcttggatgaggctcatgaaagaagtctgaacacagacatacttata
ggaatgctttctcgtattatacgggagcgtcagagaatatatgaggagcaaaaagagcag
gatctcctttttgggaaaaaaacaaagcctgaaaataaagtatatccactaaaacttgtg
ctgatgagtgccaccttgcgggttgaggactttgtgtctaataaaaaaatattttcggaa
cccccacctgtaattgaagttccagctcgacagtatccggtggatatacacttctcaaag
agaacagaaattgtggattatgttggccaagcctataaaaaggtcttggccattcacaag
aagcttcctccaggaggtatacttgtttttgtgactggacaaagggaagtagagtacttg
tgtcaaaagcttaggaaagcttctagagaaatggtcaaaagtaattcaagacgaattgaa
aatgcagctgctatgttggaagggaattttgttgaagatcatgacatgaatgaaataagt
gaagcatttgagattgaaggagactcaaccctgcagcaaactgatagatttagttcctat
gatgatgattatgatgatttatccgagaatgagtcagatgcttcttttgattcggatgaa
gatagtgatctggaggtttctggcaagggtgggtatttgtttaatcagaagagcctggag
tctgatgatgtattgggggaggatggaaaccttgcttcactgaaggctgcttttgatgct
ttggctgagaaaaatacattggcgtctaatactgatggaaaactagttgcaactggtaaa
ggttccgatcaggctaatttgagctcaggggagaacaatggggaatcagatgtcccccct
gcgagcccaatgtgtgttctgcccttatatgcaatgcttcctgcatctgcacaacttaga
gtatttaatgaggtgaaggatggagagcgcctagtagttgttgccacaaacgttgctgag
acctcattaactatcccaggaattaagtatgtggtagacactgggagagaaaaggtcaag
atgtacaattctgcaaatgggatggaaacatatgaagtacagtggataagcaaggcatct
gcttcccaacgtgctggaagagctggaagaaccgggcctgggcactgttatcgcctctat
tcttctggtgccttcagtaataaattttttgatttctcagatgctgaaatttcaaaaata
cctgttgatggagttgtccttatcatgaagtctatgggtattgataaggttaaaaatttt
ccatttcccaccccccctgaggatgatggtatagataaagcggaaaaatgcttaaagttt
cttgaagctcttgatggtaatagcaggctgacctctcttggaaaagcaatggcacactat
cctatgagtccacgacattcgcggatgctcttaactgtcattcaaatacttctaaagagt
aaaggatattcgcggcctaatctagttcttagctatgctattgcagcagctgcagctttg
agcttgtctaatccttttattacacaatttgaaggaaaccatgatgagaaagatgaaact
gcgtctagtgagaaggtattagacaaggaagaaaaactgaggaaaaagagacaaaaagaa
gcttctagagcatctcgtgcaaaattttgtaaccctactagcgacgctttgagcatagct
tatgcgttgcaatgctttgaactttctgataaccctataaacttctgtactgaatacgct
ttacatatcaaaaccatggaggaaatgtccaagcttagaaagcagttacttaagctagta
tttcaacagagtttgtgtaattctcaacaggatgtttcctggactcatgggaaaatgata
gacgttgaatcttcttggagggacttttctaataatcaacatttgtcatctgccgaggaa
gaactactgggccaagctatctgtgctggttgggtagatagggttgctagaaagactaaa
gcatattcagatttgtcagacggagataaaacttttaattcagttcgttacgaagactgc
atgagggaagaaatattttttctccatcgtagatcatcagtatcaaggtcagccccagaa
tatctggtgtacaatgaattagtgcatacaaaacggccttacatctatggtgcaacaact
gtgaaaccagactggcttgtcaggtatgcgagttttaattgcacattctctgcgccacat
acggatcccagaccctattatgaaccgctaagcgaccaagttttgtgttggaagactcca
tcttttggccctcgtatgtggcagctcccgctccatcgttttcctatagaagataatatg
caacgggttactgtgttcgcttcttccttgattggaggtgctgttttaccctgtctgaaa
tccttccagaaatttttagctgttacacctgcaactattttgaggccagaatcattagga
cagaaacgagtggggaatctactccacaaattacagagcagaacaaaaataattgatagt
tgtgctatgttaagagagttgtggagtgaaaatcctgaagatttatatcctgaaattctt
gatatgttccaagagggattctataatcaatttgaagagctttgggtagagatgcaccgt
gaggttcttttagatccacgacgacgctttgccaagaaaggtaaaaaagaacgctctgga
aagaaagatacatgtaggggaaaaaaatctggttag
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