Daucus carota (carrot): 108214406
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Entry
108214406 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108214406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108214406
03012 Translation factors [BR:
dcr03012
]
108214406
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108214406
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108214406
Translation factors [BR:
dcr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108214406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
ATPase
T2SSE
AAA_16
DUF445
DUF3882
Motif
Other DBs
NCBI-GeneID:
108214406
NCBI-ProteinID:
XP_017241880
UniProt:
A0AAF1AV23
LinkDB
All DBs
Position
3:49718984..49733574
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AA seq
1180 aa
AA seq
DB search
MPLSPILLRLNTNPLVSMSLIQSRTHFSLRFLFITKPFNLAPTLSFARPLVSFSKVSSTP
LRLKRRGNHLSSNYLYKQSFGYGRYAYEEYDSGLESDRDSQSSKQLGASTLDNVEEWKWK
LSMLIRKKDEQEVISREKKDRRDFQQISALAARMGLCSQQYSKVIVISKVPLPNYRSDLD
DRRPQREVILPYGLEEELVAQLKKYIVKKSTNKEFVLDNAISRSSTVGNLASNQQIYEQE
EPIKRTSPGAERILQRRSLEILNKQQSWQNSLEGQKMQEFRKTLPAYKERGSLLNLVAQN
QVVVVSGETGCGKTTQLPQYILESEVEANRGAACSIICTQPRRISAMSVAERVAAERGEN
LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRMLKGVTHVIVDEIHERGMNEDFL
LIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSHFLENILEMTG
YRLTTDNQIDNYGQDKMWKMQKQALRKRKSQIASAVEDTLEAFDLREYSLRTRDSLSCWN
PDSIGFNLIEHVLCHICRKERPGAVLVFMTGWDDINSLKGQLQAHPLLGDPSKVLLLGCH
GSMDSTEQRLIFNKPEEGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPTWISKASARQRRGRAGRVQSGECFHLYPRCVHDSFADYQLPELLRTPLQSLCLQIKS
LQLGSISEFLSRALQAPEPLSVQNAIEYLKTIGALDEYENLTVLGQKLSVLPVEPKLGKM
LILGAIFNCLNPIMTVVAGLSVRDPFLMPFDRRDLAEASKAQFSSRDFSDHLALIRAYEG
WKNAEKRQAGHDYCWKNFLSLQTLRAIDSLRKQFFYLLKDTGLVDDVDKCNSWSHDEHLI
RAITCAGLYPGICSVVNKDKSISLKTMEDGPVLLHSNSVNAQQPKIPYPWLVFNEKVKVN
SVMLRDSTAVCDSMVLLFGGSLSRGGLDGHLKMLGGYLEFFMKPGLAETYLRLRKELEEL
IQNKLLNPKLDINDHNELLSAVRLVVSDDRCDGKFVYGRHLPSPSKKELKKQSKGTLTVG
GGDNAKNNLQTVLSRAGHEPPTYKTKQLKNNKFRSIVMFNGLDFVGQPCTSKKSAEKDAA
SEALQWLIGENQPSQKTVDHMSTILKKSKRTQELHPARWR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccattatcacccattttacttagactcaacacaaacccacttgtatcaatgtctctt
attcaatcaagaacccatttttcacttagatttctttttatcaccaaaccatttaatctt
gcccccaccttatcatttgcacgacctcttgtttctttctcaaaagtctcttcaactccg
ttgagactcaagcgtcgtgggaatcatctttcttctaattatttgtataagcagagcttt
gggtatggcaggtatgcttatgaggagtatgattctggacttgagtctgatcgtgattct
cagtcttctaagcaattgggtgcttcaactcttgataatgttgaagagtggaaatggaag
ttatccatgcttatacgcaagaaagatgaacaagaagtgatatcaagggagaaaaaggat
agacgagattttcagcaaatctcagcattagcagccagaatggggttatgcagccaacaa
tactctaaagtcatcgtcattagtaaagttccactgccaaattacagatcggatttggat
gatagacgaccacagagggaggttatcttaccatatggtctagaagaagagttggttgct
caattgaagaagtacatagtcaaaaagtctacgaataaagagtttgttctagataatgct
atttcaagatcaagcactgtgggtaatttggctagcaatcaacaaatttatgagcaagaa
gagccaattaaaagaaccagtcctggtgcagagagaattctacagcggagaagcttggaa
attcttaacaaacaacagagttggcagaactctctagaaggccaaaagatgcaagaattt
cggaagactctcccagcatataaagagagaggttcattgctaaaccttgttgcacaaaac
caggtagtagttgtttctggcgaaactggctgtggtaaaaccacacaactgccccaatat
attttagagtctgaggttgaagctaatcggggtgcagcttgcagtattatttgtacccaa
cctcggcgaatttccgcaatgtcagttgctgaaagagttgctgctgagagaggggagaat
ctgggagagtctgttggctacaaagttcggttagagggtatgaaagggagggatactcgc
cttttgttttgcactactggcattttattaaggagattgcttgttgacagaatgttgaaa
ggtgtaactcatgttattgttgatgaaattcatgagcgcgggatgaatgaagatttcctt
ctcattgtccttaaggatcttcttccccgccggccagaactaagattgatactgatgagt
gcaacactaaatgcagaactcttctcatcatacttcggtggtgctccaatgatccatatt
cctgggtttacttacccagttcgaagtcattttctggagaacatattggagatgactggg
tataggctaacaactgataaccaaattgacaattatggccaagacaagatgtggaaaatg
cagaaacaagctcttagaaagaggaaaagccaaattgcctctgctgtcgaggatacactt
gaagcgtttgatctaagggagtatagtctccgcactcgggattcactttcctgttggaat
cctgattcaatcggctttaacctcattgagcatgtactttgccatatttgtagaaaagag
aggcctggtgcagttttggtctttatgactggctgggatgacataaactccttgaagggt
cagctccaagctcatccactcctgggtgatccaagcaaagttttgttgctcggatgtcat
ggttcaatggacagcacagagcagagattgatattcaataaaccagaggaaggaatcagg
aagatagtcttagcaactaacatggctgagacaagtattaccattaatgacgtggttttc
gtggtggactgtggaaaggccaaggaaacatcgtatgatgcactaaataacacaccttgt
ttgctgcctacctggatttcaaaggcctctgctcgtcagagaagaggaagagctggtcgt
gttcaatcaggagagtgttttcatctctatcccagatgtgtacatgattcttttgctgat
tatcagctacctgaacttctgaggacacctttacaatctctttgtttgcaaattaagagt
ttacaactaggaagtatttcagagttcttgtcaagggcattgcaggctccagaaccgctg
tcggttcaaaatgcgatcgagtatttgaaaacaattggtgctttagatgaatatgaaaat
cttacagtactaggacaaaagttgtcagtgcttcctgtggagcctaaacttggcaaaatg
ctcatcttaggggcaattttcaactgccttaatccaataatgacggttgttgctgggctg
agtgtcagggatcccttcttgatgccttttgacaggagggatcttgctgaggcatcaaag
gcccagttctcatctcgtgattttagtgatcatcttgctcttatccgggcatatgaaggt
tggaagaatgctgagaaacgtcaagctggtcacgattactgttggaagaactttctttct
ctacaaactctgagagcaatagattctctccggaagcagttcttttacttgctcaaggac
accggtctggttgatgatgtagacaaatgcaattcctggagtcatgatgagcatctcatc
cgagccataacttgtgcaggtctataccctgggatatgctcagttgtgaacaaagacaag
tcaatatcattgaaaacaatggaggatggtccagtacttctgcactcaaattctgtgaat
gcccagcagcctaaaattccttatccatggctagtttttaatgaaaaggtgaaagtcaat
tcagttatgctacgggattcaactgctgtatgtgactcaatggttcttctgtttggtgga
agcctttccagggggggcctagatggacacttgaaaatgttaggagggtacttggaattt
tttatgaaacctggtttagctgaaacatatctaagattaaggaaagagcttgaggaactc
attcaaaataagctactcaatcctaagttggatattaatgatcataatgagctcctgtca
gctgtaagactggtggtttcagatgaccgatgtgatggcaaatttgtctatggacgccat
ttgccgtctccctccaagaaggaactgaaaaaacaatcgaaaggaacattaacagtgggt
ggtggcgacaatgcaaaaaataacctccaaacagtacttagcagggcagggcacgagcca
cctacttacaagactaagcagttaaagaataacaagtttcgttccatagtgatgttcaat
ggattggatttcgttggtcagccatgcaccagtaaaaaatctgcagaaaaggatgcagcc
tctgaggcgcttcaatggctgattggtgagaaccaaccatctcagaaaaccgttgaccac
atgtcaactatattaaagaaaagcaaaagaacacaagaacttcatcctgctaggtggagg
tag
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