Daucus carota (carrot): 108214410
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Entry
108214410 CDS
T05350
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108214410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108214410
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108214410
Spliceosome [BR:
dcr03041
]
Complex C
Other components
Step II factors
108214410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
Sigma54_activ_2
AAA_16
TsaE
AAA_30
ABC_tran
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
108214410
NCBI-ProteinID:
XP_063945686
LinkDB
All DBs
Position
3:56789830..56794816
Genome browser
AA seq
1200 aa
AA seq
DB search
MASEVKDEGLKKLEYLSLVSKVCTELESHLGFGDKVLAEFITELGRDCESVDVFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPSVGKSKKGGEGKKGEEGGDSKFPALNISDSRERVKEL
EREIALEAKEKARKDGGDDERRYRDRGGEDRGGGRGRDREGGGDERDRRGDRGERRRDDR
GDFRGKERHRDRGDRNRRDGYDEDGEDDRGDFRGKERYKERNDRNRRDGYDEEGERGRDK
SMSGEPELYQVYKGRVQRVMDTGCFVQLNELRGKEGLVHVSQMATRRISNAKDVVKRDQE
VYVKVISISNQKLSLSMRDVDQNTGEDLLPLKKSSEDSRMNPSGSNNGGPTTRTGLSGIR
ITDDDAPLPSRRPLKRMSSPERWEAQQLIASGVLSVKEYPMFDDETDGLLYEEEGADEEL
EIEMNEDEPAFLNGQTRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTM
LDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGSALTFGQRSKLSI
QDQRKSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTSGKIGCTQP
RRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLMREILIDENLSQ
YSIIMLDEAHERTIHTDILFGLLKRLVKRRPDLRLIVTSATLDAEKFSGYFFSCNIFTIP
GRTFPVEILYTKQPESDYLDAALITVMQIHLTEPEGDILVFLTGQEEIDHACQCLYERMK
GLGKNIPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVIDPG
FAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSPTSIP
EIQRINLGVTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKMGR
KMAEFPMDPPLSKMLLASVDLGCSDEILTIIAMIQTGNVYYRPREKQAQADQKRAKFFQP
EGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDRYKLDIVSAGK
NYMKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTT
KEYMREVTVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgaggttaaagacgaaggcttgaagaaacttgagtatctttcattggtttca
aaggtatgcactgaacttgagtctcatttagggtttggtgataaagttttggctgaattt
ataactgagttgggtcgtgattgtgaatctgttgatgtttttgatgctaaattgaaagaa
aatggtgctgagatgcctgattattttgttaggactcttttgactataattcatgccatt
ttgcctcctagtgttgggaagtcgaaaaagggtggggagggaaagaagggtgaggagggg
ggtgattcaaagtttccggctttgaatataagtgatagtagggagagggttaaggagttg
gagagggaaattgcgttggaggcgaaggagaaggcgaggaaggatgggggtgatgatgag
aggaggtatcgggatcggggtggggaggataggggtggggggagagggagagatagggag
gggggaggggatgagagggataggaggggtgatagaggggagagaaggagagatgataga
ggggattttaggggtaaagaaaggcatagggatcgaggtgataggaataggagagatggg
tatgatgaagatggggaagatgatagaggggattttaggggtaaagagaggtacaaggaa
aggaatgacaggaatcggagagatgggtatgatgaagagggggaaaggggtcgtgataag
tcgatgtctggtgaaccggagttgtatcaggtttataaggggagggtgcaaagagtgatg
gatactggttgttttgttcagttgaatgagcttagaggtaaagagggtttggttcatgtt
tcacaaatggcgactaggaggatttccaatgccaaggatgttgtgaaacgggatcaggag
gtgtatgtgaaggtaatatcgatttcgaatcagaagttgagtttgtccatgagggatgtt
gatcagaatacaggtgaagatttgttgcctctgaagaagagctcagaggatagtaggatg
aatccttcagggtcgaataatggagggcctactacacggactgggctttcagggattaga
attactgatgatgatgcccctcttccatcgcgtcgacccttaaaaagaatgagttcgcct
gagagatgggaagcacagcagctgattgcttctggtgttttaagtgtcaaggagtatcct
atgtttgatgacgaaacagatggtctactatatgaagaggaaggtgctgatgaagagtta
gagattgagatgaatgaggatgaacctgcttttttgaacggccaaacccgatattctatg
gacatgtccccggttaaaatttttaagaatcccgagggttcactaagtcgtgcagcagct
cttcagtcagctcttattaaggagagaagagaagtgagggagcagcagcagagaaccatg
ctagattcaattcctaaagatcttaacagaccatgggaagatccaatgcctgaaacgggt
gagaggcatctagcacaggagcttagaggtgttggtttgtctgcatacgacatgcctgaa
tggaaaaaagatgcttttggttcagctctcacttttgggcagaggtcaaagctgtccata
caagaccagaggaagagtttaccaatatacaaattgaaaaaagaactagtacaagcagta
catgacaatcaggttctggttgttatcggggagacaggttcaggcaagacaactcaggtg
acacagtacttagctgaagcaggttatactaccagcggtaaaattggatgtactcaacct
cgtagggttgctgcaatgtctgtggctaagagagtggctgaagagtttggttgtcgttta
ggggaggaagttgggtatgccattcggtttgaggattgcacaggtccggacactgttatt
aagtacatgactgatggtatgcttatgagagagattcttattgacgagaacttatctcag
tactctattataatgcttgatgaagcgcatgagaggacgatccacacggatattcttttt
gggctactcaaaagacttgtgaaaaggcgaccagatcttcgattgattgtaacatctgcc
acattggatgctgagaaattttcaggttatttctttagttgcaacatatttacgattcct
ggaagaacttttcctgtagagatattgtataccaaacagccggaaagtgactacttagat
gcagcactgatcacagtcatgcagattcatttgacagaaccggaaggagatatccttgtc
ttcttgacaggtcaagaggagatcgatcatgcatgccaatgtctttatgaaaggatgaaa
ggtctgggcaagaatatacctgaactcattattctaccagtctatagtgctttacctagt
gaaatgcagtctaggatatttgatcctgctcctccaggaaagaggaaagtggtcgttgca
accaatatagctgaagcttcactgacaatcgatggtatatattatgtcattgaccctgga
tttgcaaagcaaaatgtttacaatcctaaacaggggcttgattcactggttataactccc
atctcacaagcatcggcaaagcaacgagctgggcgtgcaggacgaactggaccaggtaag
tgttatcgcctgtacacagagagtgctttccacaatgagatgtcccctacctcaatacct
gaaatccagagaataaatctcggagtcactaccttgaacatgaaagcaatgggaataaac
gatcttctatcatttgattttatggaccctccttctcctcaagctctcatttctgctatg
gaacagctatatagtcttggagctctcgatgaagaggggcttctcaccaaaatgggtagg
aaaatggcagagtttccaatggatccgccactctcaaagatgctcctagctagtgtagat
cttggttgtagtgatgagattctgactatcatagcaatgatccaaactggaaatgtttac
tacagacccagggaaaagcaagctcaagctgaccaaaaaagggccaagtttttccagcct
gaaggtgaccatcttacattgcttgctgtatatgaggcttggaaagcaaaaaatttctcg
ggtccatggtgtttcgagaattttgtccaatctcgatcgttaaggagggctcaagatgtg
cggaaacagctcctttccatcatggacaggtacaaattggatatcgtcagtgctgggaag
aactatatgaaaatcagaaaggcgataacagcaggatttttcttccatgcagccagaaaa
gatccacaggagggataccgtacactagtggagaatcaaccagtttatattcatcctagc
agtgctctttttcaaagacaaccagattgggtcatctaccatgaactggtaatgacaaca
aaagagtacatgcgtgaagttactgttgttgatcccaaatggcttgtggagcttgcaccc
cgattcttcaaagtcgcagatcctactaaaatgagcaaacgcaaacgtcaagaacgtatt
gaaccactttacgacagatatcatgaaccaaattcttggcgtttgagtaaaaggcgtgct
tag
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