Daucus carota (carrot): 108214433
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Entry
108214433 CDS
T05350
Name
(RefSeq) serine/arginine-rich-splicing factor SR34
KO
K12890
serine/arginine-rich splicing factor 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108214433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108214433
Spliceosome [BR:
dcr03041
]
Common components
Common spliceosomal components
SR proteins
108214433
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_YTH1
RRM_7
Motif
Other DBs
NCBI-GeneID:
108214433
NCBI-ProteinID:
XP_017241915
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All DBs
Position
3:complement(61051200..61058528)
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AA seq
298 aa
AA seq
DB search
MSRSSKVLYVGNLPGDVREREVEDIFYKYGPIAHVDLKIPPRPPGYAFVEFEEARDAADA
MRGRDGYDFDGHRLRVELAHGGRGNGNLSSSDRHSNHGGGRGGGGRGGGVSRRSDYRVMV
SGLPSSASWQDLKDHMRRAGDVCFAQVFREGGGTTGIVDYTNYDDMKYAIRKLDDSEFKN
AFSRGVIRVKVYDSSRSPGPSRGRSYSRSRSRSRSKSRSRSKSKSPKPKSSRRSRSRSRS
VSSRSRSRSRSKPRALSRSRSRSRSPAPPRQKRVSKSPKKSKSPSPRPSRSRSNSGSR
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggtcgagtaaggttctgtatgttggcaatctccctggcgatgttcgcgagcgc
gaagtcgaagatattttttacaagtatggaccaattgctcatgttgacttgaaaattcca
ccaagaccgcctggctatgcatttgttgagtttgaagaggctcgtgatgctgctgatgct
atgaggggacgtgatggctatgattttgatggtcatcgcttacgggttgagcttgcacat
ggcgggcgtggaaatggtaatttatcttcatcagatcgccatagtaatcatggcggtggt
cgtggtggtggtggacgtggtggaggtgtgtcgaggcgttcagattatcgtgtcatggtg
agcggattaccctcttctgcatcatggcaagaccttaaggatcatatgcgtcgtgcagga
gatgtatgctttgcccaagtttttcgtgagggtggcggcacaactggtattgttgattat
acgaactacgacgatatgaaatatgctataaggaaattggatgactctgaattcaaaaat
gccttctctcgtggtgtaattcgagtgaaggtttatgattcaagccgcagtccaggtccc
tccagaggccgaagttacagtcgcagccgcagtcgtagtcgaagtaagagtcggagcagg
agtaagagcaaatctccaaaacctaaatcttcacgccgttcaagatctcgttcaagatct
gtatcttctcgctctcggtcgcgctctagatcgaagccgcgtgctctgtcaagatcacgg
tcaaggtccaggtctccagcaccacctcggcagaaacgtgttagtaaaagccccaaaaag
agcaagagtccaagtccacgtccaagtcgtagccgtagcaatagtgggtccaggtga
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