Daucus carota (carrot): 108214460
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Entry
108214460 CDS
T05350
Name
(RefSeq) cell division cycle 20.1, cofactor of APC complex
KO
K03363
cell division cycle 20, cofactor of APC complex
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108214460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108214460
03036 Chromosome and associated proteins [BR:
dcr03036
]
108214460
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
108214460
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Sister chromatid separation proteins
APC/C complex
108214460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_SCAP
RMC1_N
Beta-prop_WDR75_1st
Ge1_WD40
Beta-prop_RIG_1st
CFAP43_N
Beta-prop_VPS8
gp12-short_mid
WDR54
Beta-prop_IFT80_2nd
Motif
Other DBs
NCBI-GeneID:
108214460
NCBI-ProteinID:
XP_017241951
UniProt:
A0A165ZNK6
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Position
3:complement(3430416..3433357)
Genome browser
AA seq
449 aa
AA seq
DB search
MDAGAANSSYNKATNYRSPLQRKNSRDDLDRFIPNRSAMDFDYAQYMLMEARKGKENPAV
SSPSREAYRKQLAETFNMNRTRILAFKNKPPTPSKAVQIDCLSGAVHQAKPKTRRYIPQT
SERTLDAPDLVDDYYLNLLDWGSANVLAIALGNTVYLWDASNGATSELVTLDEESGPVTS
IKWAPDGRHIAVGLNNSEVQLWDSTANKQLRTLRGCHSSRVGALDWNNQILTTGGMDGQI
VNNDVRIRDHIVETYRGHHQEVCGLRWSASGQQLASGGNDNLLHIWDRSTASSNSPTQWL
HRLEDHTAAVKALAWCPFQGNLLASGGGGGDRCIKFWNTHTGACLNSVDTGSQVCSLLWN
KNERELLSSHGFTQNQLTLWKYPSMVKIAELTGHTSRVLYMSQSPDGCTVASAAADETLR
FWNVFGTPEVAKPAPKAAQEPFAHLNRIR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaggagccgctaattcttcgtataacaaggcgactaactatagatctcctctg
cagagaaagaattctcgagacgatttggataggtttattccgaatagatctgccatggat
tttgactatgctcaatacatgctgatggaggcaaggaaaggtaaggaaaatccagctgtg
agctccccatcgagagaagcttacaggaagcagctagctgaaactttcaacatgaacaga
actcgaattttagctttcaagaacaagccaccaaccccctccaaggctgttcaaattgat
tgcttgtcgggagctgttcaccaagcaaagcccaagacacgtcgttacattccacagaca
tccgagaggaccttagacgctcccgatcttgtggatgattactacttgaatttattggac
tggggtagtgcaaatgttcttgccattgctcttggaaacacagtatacctgtgggatgct
tctaatggcgctacttctgaactagtcacacttgatgaggaaagtggtccagtgacaagc
atcaaatgggctcctgatgggcgccacattgctgttggtttgaacaactctgaggttcag
ctttgggattcaacagccaataaacagctaaggactttgagaggttgccacagctcccga
gttggagcacttgattggaacaatcaaattttgactactggagggatggatggtcagatt
gtcaacaacgatgtaagaattagagatcatattgttgagacctacagaggacaccatcaa
gaggtttgtggactaagatggtcagcctccggtcagcaattagctagtggaggaaatgat
aatctcctacacatttgggataggtcaacggcttcttctaattctccaacacagtggctt
cacaggctcgaagaccatactgctgctgtcaaagctctagcctggtgcccatttcaaggg
aatttgcttgcctccggaggaggtggaggtgatagatgcatcaagttctggaacacccac
actggtgcatgcttgaactctgttgacacaggatcacaagtttgttctctgttgtggaat
aaaaatgagagagagttgctcagttctcatggttttactcagaatcaacttactctttgg
aagtacccgtcaatggtcaagattgcagaacttactggtcatacatctagggtactttac
atgtctcagagcccagatggatgtactgttgcatcggcggctgcagatgaaacactcaga
ttctggaatgtttttggaactcctgaagtagcaaaacctgcaccaaaggcagcccaagag
ccatttgctcacttgaatcgcattcggtaa
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