Daucus carota (carrot): 108214462
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Entry
108214462 CDS
T05350
Name
(RefSeq) serine/arginine-rich splicing factor RS31-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108214462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108214462
Spliceosome [BR:
dcr03041
]
Common components
Common spliceosomal components
SR proteins
108214462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNA_bind
RRM_5
Nup35_RRM_2
DUF2129
Motif
Other DBs
NCBI-GeneID:
108214462
NCBI-ProteinID:
XP_017241953
UniProt:
A0AAF1ASL8
LinkDB
All DBs
Position
3:complement(2226910..2231467)
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AA seq
447 aa
AA seq
DB search
MKPIFCGNFEYDARQSDLERLFKKYGKVDRVDMKSGFAFVYMEDEGDAEYAIRKLDNLEF
GRKGRRLRVEWTKQERSMRKPENSRRSAANSRPSKTLFVINFDPYHTRTRDLERHFEPYG
KILNIRIRKNFAFIQFEVQEDAIKALEATNMSKLMDRVISVEYAIKDDDDRVRDRSPRRR
NDDRGRSPSPYRRERGSPDYSHGPGRGHSPSPYRRERASPDYGRGGSGTPNGKARKSSGR
GGSASPNGRDRKSGYGRGGSRSPNGRDRRSDFGRGSGSPVGGDRKPEYARGGSRSPNGRE
RRADFGRGSRSPVGDRKPDYGRGGSPDRRGRKAAYDVVQSPSPPNGRERISKHGHGRITS
PEREVVNPEPVRRSIPKERLTPEYDHGHSPSPPTEKLSPDGYNREASPDAKPEIGDSPGY
SGGDSPMHERYSSRSPPARGRAERSQS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccattttttgtggtaattttgaatatgatgcacgtcaatctgatctggagaga
cttttcaagaaatatgggaaagttgatcgtgttgatatgaagtcgggatttgccttcgtt
tacatggaggacgagggagatgcagagtatgcaattagaaaacttgacaatctggaattt
ggtagaaaaggtcgtcggcttcgtgtagagtggacaaagcaagagcgtagtatgcgaaag
cctgagaactctaggagatctgcagctaactcgaggccctcgaagactttgtttgtgata
aactttgatccatatcatacaaggacgcgggacttggagaggcattttgagccatatgga
aagatattgaacataaggatcagaaagaatttcgcattcatccagtttgaagtacaggaa
gatgctatcaaagctttagaagcaacaaacatgagcaagctaatggatcgagttatttct
gtggaatatgcaataaaagatgatgacgatagggttcgtgataggtctcctcggaggaga
aatgatgataggggacggtctcctagcccttataggagagagagggggagtcctgattat
agccatggtcctggtcgtggtcatagccctagtccctatcgcagagagcgtgcaagtcct
gattatggtcgtggcggtagcggtactcctaatggaaaggcgagaaagtcttctggtcgt
ggaggtagtgcgagtcctaatggaagggacaggaagtctggatatggccgtggcggtagc
aggagtcctaatggaagggataggagatctgattttggtcgaggcagtgggagtcctgtt
ggaggagacaggaaacctgaatatgcccgtggtggtagcaggagtcctaatggaagggaa
aggagagctgattttggtcgtggcagtagaagtcctgttggagacagaaaacctgactat
ggccgtggtggcagtcctgacagaaggggaaggaaagctgcctatgatgtggttcagagt
ccaagtcctccaaatgggagggagagaatttccaaacatggccatggacgtatcactagt
cctgaaagagaggtggttaaccctgaacctgttcgtcggtctatcccaaaagagaggctt
actcccgagtatgatcatggccacagtccaagtcctccaacagagaagcttagtcctgat
ggttacaatcgtgaagctagcccagatgccaagcctgaaattggggacagtcccggatac
agtggaggagatagccccatgcatgagcgatacagtagtcggtcaccacctgcacggggg
agagcggagagatcgcagtcttga
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