Daucus carota (carrot): 108214537
Help
Entry
108214537 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108214537
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108214537
09122 Translation
03013 Nucleocytoplasmic transport
108214537
03015 mRNA surveillance pathway
108214537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108214537
03041 Spliceosome [BR:
dcr03041
]
108214537
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108214537
Spliceosome [BR:
dcr03041
]
Complex C
Other components
EJC/TREX
108214537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
108214537
NCBI-ProteinID:
XP_017242086
UniProt:
A0A166BQ88
LinkDB
All DBs
Position
3:complement(51217942..51222781)
Genome browser
AA seq
743 aa
AA seq
DB search
MSSYPVLYNKPIDQWKVTELKDELRKRKLPIKGLKDDLIRRLDESLQQEIEITNASADQG
FASQPKPDIQYQGATTVPGFDGKNSATTNKSENKNAELDVDVNMGSSIQEQFVGGDTKAS
EPVMVPETTADFDVQGATLDSSVQANSIKTSDDVTTVGTVQEVITVEAVQEVTTVEAVPE
VTTVGFSPLVGVTGLYLSEQELLNNGAQNISEDVNIQPLNQNLNPPHEEAKLNSSELETQ
VSEVTEAKDNSNSIHNVPVAERIEDLNIQPQNEDSNPLHDANLNSFAPESQVFEVSKVTS
DSISTDNVKINEQIEFKDNIIADDVKLDFDVKHDREEPSSGNIDLGDGNLQPMDVKEHQE
NEVKVEETANRAENPDIAKNDGGDVEFLEKLNLDRSSGDDSIEEDPLESKQIESKSLSDV
AGDKREKVEVTVVRQDFPIDAMVVESVPDGIAENKNVTAVASMKRKPQDQETVGNFDTTK
RQRRWNSEGLKAVEPISDNVSPSITPKGTFQSNAKRNFSRSDSMSSVETPKERTVPPSLK
PPTSALRIDRFLRPFTLKAVQELLGKTGKVTNFWMDHIKTHCYVSYSAIEEAVETRNAVY
NLQWPANGGRLLVAEFVEPQEVQMRIEAPPPIVAPVLPAVPVPMQSQPSPRVPVQRQVPQ
AQPHFPVSLPQLAPAPVSNPPAARERALPPPPPPPERVEPPIVTLDDLFRKTKATPRIYY
LPLSDEQVNAKQSAEGKPPSSRA
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatatcctgttttgtacaacaaaccaattgatcaatggaaagtcactgagctg
aaagatgaactgaggaagcggaaattgccaattaaggggttgaaggatgatttgataagg
cgtttggatgaatcacttcagcaggaaattgaaattaccaacgcaagtgctgaccaaggt
tttgcttctcaacctaaacctgatatccagtatcaaggtgccacaacagttccaggattt
gatggaaaaaatagcgccaccactaataagagtgagaacaagaatgcagaactggatgtt
gatgtcaatatggggtcaagcattcaggaacaatttgtgggaggagataccaaggcatca
gaacctgtcatggtacctgaaactacggcggatttcgatgttcagggagcaactttagac
tcgagtgttcaggcaaatagtataaaaaccagtgatgatgtgaccacagtgggaaccgtt
caggaagtaatcacagtggaagctgttcaggaagtaaccacagtggaagctgttccggaa
gtaacaacagtgggattcagtccactggttggtgttactggattatatttgagtgagcag
gagttgctgaacaacggagctcagaacataagtgaggatgtgaacatccagccgctgaac
cagaacttgaaccctccacacgaggaggccaaacttaattcatctgaacttgaaacccag
gtatctgaggtcaccgaagcaaaagataattctaattctattcataatgtccctgttgct
gagagaattgaggatctgaacatccagccacagaacgaggattcaaatcctctacatgat
gccaatctcaattcctttgctcctgaatcccaggtatttgaggtcagcaaagtaacatct
gattctatttctactgataatgttaaaattaatgaacaaatagaatttaaggataatata
attgctgatgatgtcaaattagactttgatgttaagcatgatagggaagagccatcatcg
ggcaatattgacctgggtgatggcaatttacaaccaatggatgttaaagaacaccaagaa
aatgaagttaaagttgaagagactgcaaatagagctgaaaatccagacatagccaagaat
gatggtggagatgttgagttcttagagaagttaaacttggacagaagttctggtgacgat
tcaatagaggaggatccattagaaagtaagcagatagagtcaaaatctttatctgatgta
gcaggagataagagggagaaagtggaggtgaccgtagtgagacaagattttccaattgat
gccatggtggttgaatctgttcctgatggaatagctgaaaataagaatgttactgctgtt
gcttccatgaaacgaaagcctcaagaccaagaaacagttgggaactttgatactacaaaa
aggcagcgcaggtggaactctgaaggccttaaagctgtcgaaccaattagtgacaatgta
tcaccatctataacacctaagggcacattccagtcaaatgcgaaacgtaatttttctaga
tctgattctatgtccagtgtggaaacacccaaagaacggactgttcccccatcattgaag
ccaccgacaagtgctcttaggattgatcgatttttgcgtcctttcactttgaaagctgtg
caagaacttcttgggaaaacaggcaaagtgaccaacttctggatggatcatattaaaact
cactgctatgtcagttactcagccattgaggaagctgtagagacccgaaatgctgtatac
aacttgcaatggccagcaaatggaggccgtcttctggttgctgagtttgttgaaccccag
gaagtgcaaatgcgaatagaggctcctcctcctatagtagctcctgttctacctgctgtt
cctgttcccatgcagtcacagccttctcctcgtgtaccggtgcagagacaggtgcctcaa
gctcagccgcattttccggtttctctccctcagctagcaccagcgccagtgtctaatcca
ccagcagcaagggaacgggctcttccacccccacccccacccccggaaagagttgagcca
ccaatcgtcacgttggacgatctctttaggaaaaccaaggcaactcctcgcatctattac
ctaccattgtccgatgaacaagtgaatgccaagcaaagtgcagaaggaaaaccaccgagc
agtagagcttag
DBGET
integrated database retrieval system
