Daucus carota (carrot): 108214640
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Entry
108214640 CDS
T05350
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X2
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108214640
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108214640
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
108214640
NCBI-ProteinID:
XP_017242256
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All DBs
Position
1:51179572..51185443
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AA seq
675 aa
AA seq
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MEMVCRKRQWELFHGIVLHLFLLAQCTVGTQRFSKKNMSDIAASPPLQLHRWDDYVVVDN
GFVNITFSTPEGMVVAIQYNGIDNILEQSHTERDRGYWDVVWSKPEHPGDITDRLEGIKF
SVVLEDEDQVELSFKKTYNPSLKNSGLRLNVDKRYIVLRGISGFYSYSIFEHFEGQPPIV
LYQGRIVFRLQEDMFRYMAVSDDRQRIMPTEEDRKLGLPLDYPEAVLLTNPSDAFLKGEV
DDKYQYSCENKDNRVHGWISANPAIGFWMITPSNEFRTAGPTKQDLTSHAGPITLSMFFS
THYAGISLGIRLGQGELWKKVFGPVFIYLNSVEDESPLELWADAKEQMLIETESWPYDFP
LSEDYPYANERGTVSGRLLVSDRYINNELMTASSAYVGLAAPGNAGSWQTENKGYQFWTQ
TDDQGYFLIEDVRVGNYSLYAWVPGFIGDYKYELLINIRPGSKIKLKDIEYVPPRNGATL
WEIGIPDRTAAEFYVPPPNPMLLNQLYVQNNAQGFRQYGLWDRYTDEYPDQDLVYTIGVS
NYQIDWFFAHVNRNIGNKTYVPTTWQILFDLEEVDQNGNYTLHLALASATAAELQVRIND
YNPTSPHFTTGLIGQDNAIARHGIHGLYRLYSVNVWGSLLLEGRNVIYLTQAVGVRAFRG
IMYDYIRFEQPAYQD
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagatggtgtgcaggaagaggcaatgggagctgtttcatgggattgtgttgcacttg
ttcttgcttgctcaatgcactgtcggaacccaaagattttctaaaaagaacatgagcgat
attgctgcttctcctcctcttcaactacatagatgggatgattatgttgtggtggacaat
ggatttgtcaacattaccttttcaactccagagggtatggttgttgcaattcagtacaat
gggattgataatattcttgaacaaagtcatacagaaagagatagagggtattgggatgtt
gtttggagcaagccagaacatcccggagatattactgacaggctcgaagggataaagttt
agtgtagtactagaagacgaagatcaagtagagctttcattcaaaaaaacatataatccg
tctctcaaaaacagtggattaaggcttaatgtagacaaaagatacatagtgctccggggc
atcagtggtttctattcgtactcaatatttgagcactttgagggacagccacctatcgtt
ttgtaccaaggaagaattgtgttcaggctacaagaagatatgttccgctacatggcggtt
tctgatgatcgacaaaggattatgccaacagaagaagaccggaaactgggactaccactt
gactatccagaagcagtgctattgacaaatccatctgatgcatttcttaaaggagaggtg
gatgataaatatcagtattcatgtgaaaacaaagacaatagagtacatggatggatatct
gctaatccagccattggcttttggatgattacaccaagtaatgagttccgaactgctggg
ccaaccaaacaagatctcacctctcacgcaggtcccataactctatctatgttctttagt
actcattatgctggaatatcactgggaataagattgggacaaggggagttatggaaaaag
gtttttggccctgtttttatttatttaaactctgtagaggatgagagtccccttgaacta
tgggcagatgctaaagaacagatgcttatagaaactgaaagttggccttacgatttcccg
ctttcagaagactatccttatgccaatgagcgaggcactgtaagtggaaggttactggtc
agcgacaggtacatcaacaatgagttgatgactgctagttctgcttatgtgggattggct
gcaccgggaaatgcaggatcatggcaaacagaaaacaaggggtaccaattttggacgcaa
actgatgatcaggggtactttttgatcgaagatgtccgagttgggaactacagcttgtat
gcttgggtaccaggattcattggtgattataaatacgaactcttaattaacatcagacca
ggtagtaaaattaaactaaaagatattgaatatgttcctccaagaaatggtgccaccctt
tgggaaattggcattcctgaccgcactgctgctgagttttacgtgcctccgccgaacccc
atgcttctgaatcagttatatgtccaaaacaatgcacaagggttcaggcagtatggactg
tgggatcggtacacagatgaatatcctgatcaagatttagtctacaccatcggggttagc
aactatcagatagactggttctttgctcatgttaacaggaatataggaaacaaaacatat
gtacccactacctggcaaattttatttgatctcgaagaagttgatcaaaacggaaattat
acattgcatctggcattggcttctgccaccgcagctgaattacaagttcggataaatgac
tacaatcctaccagtcctcacttcacgacagggctcatagggcaggacaatgccatagca
aggcatgggattcatgggttatacaggctatatagtgttaatgtttggggatctttgcta
ctagaaggaagaaatgtaatatatttaacacaagcagtaggtgttagggctttcagagga
atcatgtatgactacattcgctttgaacagccagcttaccaagattaa
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