Daucus carota (carrot): 108214724
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Entry
108214724 CDS
T05350
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108214724
Enzymes [BR:
dcr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
108214724
Transfer RNA biogenesis [BR:
dcr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108214724
Prokaryotic type
108214724
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
108214724
NCBI-ProteinID:
XP_017242370
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All DBs
Position
3:complement(64429510..64462662)
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AA seq
534 aa
AA seq
DB search
MAAAAAAISSLRIAFCPAKTSPKHFRCRSHKLAMCCFSSSSSSASELDNLPAPYYLPNTK
WDPFRKKKVVMRVGYIGTDYRGLQKQPDQPSLSTIEGELEIALYKAGGIRDSNFGNLHKI
GWGRSSRTDKGVHSLATMISLKMEIPVYAWKEDPNGISLANHINSYLPRSIRVFSVLPSQ
RSFDARRECNIRKYSYLLPAEIIGIKDTLSAAEIDCHLTEFTNILSSFEGEHPFHNYTIR
SKYRKPSSARDSSKTGSGSKIARLSNEVLDPEKEDYDEEKEATNFDVEEGGKEINTQKSD
ALATDVEGMNSKFSRFNKPGKLISGLCDSPNNDSHDQYPLSACQARWLYEPDKKDKLSAS
HFRKIFHCSCGKLERILDISYVEISIYGESFMLHQIRKMVGTAVAVKRDLLPRDILMLSL
NKFSRIVLPLAPSEPLILRGNDFVLRNQSGNVTRPELQTLVESEEILKLVDDFYMSLVVP
EVSNFLNISKSPWREWVALLDANTGIPDSQLDEVRNAWQLWKETFQHRTNDMSR
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgctgccgctgcgatttcttcattgcgaattgccttttgtccggcaaaaaca
agccctaagcacttccgatgccggagccataaactcgcaatgtgttgtttttcatcttcc
tcctcttctgcctctgaactcgacaacctcccggctccgtattatctccccaataccaaa
tgggatcccttccgcaagaaaaaggttgtaatgcgcgtcggctacatcggcaccgattat
agaggcttgcaaaagcaaccggatcagccctctctatcaactatagaaggagaactggaa
attgctctctataaagctggtggaattcgagatagtaactttggtaatttgcacaaaatt
ggatggggtagaagtagccgtacagataaaggagttcattccttggcaaccatgatatca
cttaaaatggaaatccctgtatatgcatggaaggaagaccccaatggcatctctcttgca
aatcacattaattcttaccttcctcgtagtatcagagtttttagtgttttaccttcacaa
aggagctttgatgctagaagggaatgtaatatccgcaaatattcttatctcctaccggct
gaaataattggaattaaagataccttaagtgcagctgaaatagattgtcacttgaccgag
tttaccaatattttaagctcttttgagggagagcatccttttcataactatacaatacgg
tccaagtacaggaaaccaagtagtgcaagagattcttctaaaactggtagtgggtcaaag
atagcgaggttatctaatgaggtattggaccctgaaaaggaagactatgatgaagaaaaa
gaagcaacaaactttgatgttgaggagggcggcaaagaaattaatacccaaaaaagtgat
gcattagcaacagatgttgaaggaatgaactccaagttttctaggtttaacaaacctggt
aaacttatatcgggcttgtgtgattctcctaataatgattcacatgaccaatatccactt
tcggcttgtcaagcaagatggctatatgaacctgacaagaaagacaaactaagtgcttct
cattttagaaagatttttcactgttcttgtggaaagctggagcgaattcttgatataagt
tacgtggagatatccatatatggagaatcattcatgttgcatcagattcgcaaaatggtt
ggaacagctgtggcggtgaagcgcgatttactcccacgcgacatacttatgttgtcactg
aacaaattctcacggattgtcctacccctcgctccatctgaacccttgattttaagggga
aatgactttgttttgagaaaccaatctggcaatgtgactagacctgaattgcagacgcta
gtggaatcagaggaaattctgaagttggttgatgatttttatatgtcattagtcgtacca
gaagtttcgaatttcttaaatatttcaaaatctccttggagggaatgggtagcattactg
gatgcaaacactggtattccggattcacagttggatgaagtcagaaatgcttggcaactt
tggaaggaaacttttcaacacagaaccaatgatatgtcaagataa
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