Daucus carota (carrot): 108214735
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Entry
108214735 CDS
T05350
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108214735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108214735
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108214735
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
108214735
NCBI-ProteinID:
XP_017242386
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Position
3:6809467..6813356
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AA seq
229 aa
AA seq
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MCRASKYKLQYDPPSSPSPTHTPAGSDTTMVTSPIVNTYPLASYTFGVKEPKMEKDTSVA
DRLARMKVNYMKEGMRTSVEGILMVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGL
KRKLSSKLAATSPGIQPDWQIGECVATWWRPNFETVMYPYCPPHIAKPKECKKIFLVHLS
EREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFSMMQA
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagagcgagtaaatataaattacaatacgaccccccttcgtctccatccccaact
cacacaccggccggatccgacacaaccatggtcacgtcgccgatcgtaaacacataccca
ctcgccagctacactttcggagtcaaagagcccaaaatggagaaagacacctccgtcgcc
gatcgtttagctcgtatgaaagtcaattatatgaaggagggtatgaggactagcgtcgaa
gggatattgatggtacaagaacacaatcacccacatatacttctgctgcaaattgggaac
actttttgcaagcttcctggtgggcgtctaaagccaggagagaatgaaattgaaggctta
aaaagaaagctttccagcaaacttgctgctacttcacctggtatacaacctgactggcag
ataggcgagtgcgtggctacatggtggaggccaaattttgaaacagtaatgtacccctac
tgccctccccacatagcaaaaccgaaggaatgtaagaagatttttcttgttcatttgtcg
gagagagagtacttcgcagtgccaaagaacttgaaacttcttgctgttccattgtttgaa
ctctatgataatgttcagagatatggacctgtcatctccaccattccgcagcagttatct
agattccagtttagcatgatgcaggcataa
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