Daucus carota (carrot): 108214868
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Entry
108214868 CDS
T05350
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 27 isoform X1
KO
K11851
ubiquitin carboxyl-terminal hydrolase 30 [EC:
3.4.19.12
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dcr01002
]
108214868
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108214868
04121 Ubiquitin system [BR:
dcr04121
]
108214868
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108214868
Peptidases and inhibitors [BR:
dcr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108214868
Membrane trafficking [BR:
dcr04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
108214868
Ubiquitin system [BR:
dcr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108214868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
DUF2152
Motif
Other DBs
NCBI-GeneID:
108214868
NCBI-ProteinID:
XP_017242588
LinkDB
All DBs
Position
3:complement(50799309..50810635)
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AA seq
582 aa
AA seq
DB search
MKIKGQVDTRLVINNLRHGLHNLPASGMRISLVALLGAAGAVLILKDAIARNFKIVPCST
SQDNLLVVPGLQNLGNNCFLNVILQALASCSGFRGFVRKRVAEHQGFSAEELEEIMPLAV
SLDSLLEDMCTPQHEIKVLSPLKVMMAINYYNQHFNLTNQQDAEEAFLHILSSLREELVE
LYVYDYGSLADAVCLVDNRILGLESRATQIELQRWKEYSLGPFDGILRSILTCHSCSNQI
SLDFHYFHSLHLPVMAGSSVEGCLKHFFAAEKLDDYFCSRCWHIAAVKYLSITNKYKKDT
VEVGNCSNQDSCDCRNLSMLRALPWSNSYSRTLKQLNVARSPEILCLHLQRVSPNMFGEL
FKFQGHISFPLTLNMSRFMNSGGGLKSCMEEDKPVWPSKPYCQPAFTFFEKHDMQIDTIK
INHTVGQTEMTSLIPEQIQAPCGVPKNTCTGGEEGLSDQLDDKGIQDSQGRPNLSSIGGY
SGIGADNALLQSNKKISENQLKASAGKYIYRLASVVQHFGRAGGGHYTVYRRVTSNLENG
DEGHQWFGISDSKVYIVSEEEVLAANASLLFYEKNSEAPTEL
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaaagggcaagttgatactaggttagtgatcaacaatctgagacatggcttg
cataatttacccgcttctgggatgagaatatctttagttgctttactcggtgctgctggg
gcagtcttgattttgaaagatgctatagcaagaaactttaagattgtgccttgctctact
agtcaagacaacttgttggttgttcctggattgcaaaatctcggaaataattgttttctt
aatgttattttacaggctctggcgagctgttctggttttcggggctttgttcgaaagaga
gtggcggagcaccaaggcttttctgctgaggaactggaagagattatgccgcttgctgtt
tcgttggattctctgttggaagacatgtgtactccccaacatgaaataaaggtcctgagt
cccctgaaagtgatgatggcaattaactactataatcagcatttcaatttgacaaaccag
caggatgctgaagaagcattccttcacatattgtcttccttaagggaagaacttgtagag
ctgtatgtatacgattatggatcactagcagatgcagtttgtttggttgataataggatt
cttggtcttgagagtagggccacacaaattgagcttcaaagatggaaagaatacagcctt
gggccttttgatgggattcttaggagcattttaacttgccatagctgttcaaatcagatt
tcccttgattttcattatttccacagtctgcacctcccagtgatggccggatcttctgtg
gaagggtgcctaaagcatttttttgctgcagaaaaacttgatgattacttctgcagccgc
tgttggcatattgcggcagtaaaatatctatccataactaataaatataagaaagacact
gtagaagttggaaactgtagcaatcaagattcttgtgattgcagaaatctctctatgctt
cgagccttaccatggtcgaatagttattcacgaactttaaagcaactgaacgtggcacgt
agcccagagattttgtgcctgcatctacaacgtgtttcaccgaatatgtttggagagctt
tttaagtttcagggacatatttcttttccattgactttgaacatgtcccggttcatgaat
agtggaggtggtttaaagagctgcatggaagaagataaacctgtgtggccatcaaaacca
tattgtcaacctgccttcactttctttgaaaaacatgacatgcaaattgatacgatcaaa
ataaatcatacggttggacaaacagagatgacttctttaattccagaacaaatacaagct
ccatgtggggttcccaaaaacacatgtaccggaggtgaagaaggtttgtctgaccagctg
gatgataaaggcatccaagattctcaaggacgaccaaatttatcctctattggaggttac
tctggcatcggtgctgataatgcacttttgcaatccaataaaaagatttctgaaaatcag
ctcaaggcatctgcaggcaaatatatttatcgcctagcttcagttgtacaacactttgga
agagcaggaggtggtcattacacagtttacagaagagtaacaagcaacttagaaaatggt
gatgaaggtcatcagtggtttggtatatcggactctaaagtgtacatagtctccgaggaa
gaagtgcttgcggctaatgctagcttgcttttctatgagaagaactcagaggcaccaaca
gaactttga
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