Daucus carota (carrot): 108214923
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Entry
108214923 CDS
T05350
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108214923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108214923
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
108214923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
108214923
NCBI-ProteinID:
XP_017242660
UniProt:
A0A162AGH6
LinkDB
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Position
3:complement(8053527..8063251)
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AA seq
792 aa
AA seq
DB search
MITGGGAFEDEEKWLAEGIAAIQHNAFYMHRALDSNNLREALKFSALFLSELRTSRLSPH
KYYQLYMRAFDELRKLEVFFKEEDRHGCSVVDLYELVQHAGNILPRLYLLCTVGSVYIKS
KDVSAKDVLKDLVEMCRGIQHPIRGLFLRSYLSQVSKDKLAEIGCQYEGGEDSVMDAVEF
VLQNFAEMNKLWVRMHHQGPPRIKEKMEKERSELCDLVGKNLHLLSQIEGVDLEMYRDTV
LPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGAFPQLQATVDIKTVLSRL
MERLSNYASSSPEVLPDFLQVEAFNKLSGAIGKVIEAQIDMPIVGVITLYVCLLTFSLRV
HPERLDYVDHVLGACVQKLSGKPKLEDSRATKQVVTLLSAPLEKYNDIATALTLSNYPRV
MDHLDSSTNKVMAMVIIQSIMKNNTCVSTSDKVDVLFELIRGLIKDLDGTPVDELDEEDF
KEEQNSVARLIHMLYNEDPEEMLKIIVTVKNHIMTGGPKRLPYTVPPLVFTALKLVRKLQ
YQDGDVTGEEVPATPKNIFQLLNQTIETLLSVPSPELALRLYLHCAEAASDCELEPLAYE
LFTQAFVLYEEEVADSKAQVTAIHLIIGTLQRINVFGVENRDTLTHKATGYSAKLLKKPD
QCRAVYACSHLFWVDNPDGIKDGERVILCLKRSLRIANAAQQMANATRGSSGPVTLFVEI
LNKYLYFFEKGNPHITSAAIQDLVELIKTEMQSDTTASDPATNAYFASTLRYIQFQKQKG
GVMGEKFDAVKV
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgataacagggggaggagcattcgaagacgaagagaaatggctcgcagaaggcattgcc
gccattcaacacaacgccttctatatgcaccgcgccttggactccaataatctcagagaa
gcactcaaattctccgctctcttcttatcggagcttcgtacttcgcgcctttctccgcac
aaatactaccagctctatatgcgtgctttcgatgagttacgaaagctggaagtgtttttc
aaagaggaagatcggcatggttgttctgttgttgacttgtatgaacttgttcaacatgcc
ggaaacattttgcctagactgtatctactatgcacagtaggatccgtttacatcaagtca
aaggatgtttctgctaaagatgttcttaaagatctcgtggagatgtgccgtggtattcaa
catcccatacgcggtctctttttaaggagttacctttctcaagttagcaaagataagttg
gcagagattggttgtcagtatgaaggaggcgaagactctgtcatggatgctgtagagttt
gtgctacagaactttgctgagatgaataagctctgggtccgaatgcaccatcagggacct
cccaggataaaagagaagatggagaaggaaaggagcgagctctgtgatctagttggaaaa
aatttgcatcttctcagccagatagagggcgttgatcttgaaatgtacagagacactgtt
cttccaagagtgttggagcaggtggtaaactgcaaggatgagcttgcgcaatattatttg
atggactgcataattcaggtattccccgatgagtaccacttgcagactctcgagacatta
ttaggtgctttcccgcaacttcaggcaacagttgatatcaagacagtcttatcacgatta
atggagagactgtcaaactatgcatcgtcaagcccagaagtactgcccgacttcctacaa
gttgaggcatttaataaattaagtggggccattggcaaggtgatagaagcgcaaattgac
atgccgattgtcggagtcatcactttgtatgtctgtctccttacatttagcctacgtgtt
catcctgaacgactcgattacgttgatcatgtgctgggagcatgcgtccaaaaactttct
ggcaaaccaaagcttgaagatagcagagcaacaaaacaagttgttactcttttaagtgct
ccattagagaaatacaatgatattgccacagccttgacgctttctaattatcctcgtgtt
atggaccacctcgacagtagtacaaataaagtaatggcgatggttattattcaaagcata
atgaagaacaacacatgtgtttccacttctgataaggttgacgtattgtttgagttgata
agaggacttataaaggatcttgatgggactcccgttgatgagctggatgaggaagatttt
aaggaggaacaaaattctgttgcccgtctaatacatatgttgtacaatgaagacccagaa
gagatgctaaagattatagttactgtgaagaaccatattatgactggaggaccgaagcgt
ctaccatatacagttcctcctctcgtcttcactgctttgaagctggtaaggaaattgcaa
tatcaggacggagatgtgactggcgaagaggttcctgctactccaaagaatatttttcag
ctcttaaaccagaccattgagactcttttgtctgttccatcacctgagctggcactgagg
ttgtacttgcattgtgctgaggctgccagtgattgcgaactcgagccacttgcttatgaa
ctctttactcaggcatttgttttatatgaggaagaagttgcggactccaaagctcaggtg
actgcgatacacttaataattgggactctacagaggataaatgtgtttggtgtagagaat
agggacaccttaactcacaaggccacagggtattcagcgaaactattaaaaaaacctgac
cagtgcagagcagtttatgcatgttcgcatctcttttgggttgacaacccagatggaatt
aaggatggagaaagggtgattctttgcctcaagcgttcattaaggattgcaaatgctgca
cagcagatggcaaatgctacacggggcagcagtgggcctgtaactctttttgttgaaatc
ttgaacaagtatctctacttttttgagaaggggaatccacatataacaagtgctgcaatt
caagatcttgtagaattaataaagactgagatgcaaagtgacacaactgcttcggatcca
gctacgaatgcttattttgccagcacattgaggtatattcagttccagaaacagaaaggt
ggtgtgatgggtgagaaatttgatgctgtcaaagtgtga
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