Daucus carota (carrot): 108214941
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Entry
108214941 CDS
T05350
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dcr01009
]
108214941
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108214941
03041 Spliceosome [BR:
dcr03041
]
108214941
Protein phosphatases and associated proteins [BR:
dcr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108214941
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108214941
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108214941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
RRM_3
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
108214941
NCBI-ProteinID:
XP_017242694
UniProt:
A0A166B8D5
LinkDB
All DBs
Position
3:48424960..48432583
Genome browser
AA seq
919 aa
AA seq
DB search
MDQRLVFPKGDLSPHDSASDPEEKEFSDDDDDDRNHKHRRRETQTQSLERDIGQASTRPY
RNRNKPFENGHPHRESASQSNETWRNYNMPPLEKDFPGKFDRRRPGSTPISRAPLDLNQR
GRGNQSWTGDPGSGRGRGREPWGVRDSRFSSLDFNPAIAQQGYVPSSLFAGRGMSSVSNP
QSASWTAFGLVPGLPNGGLDSLHPLGLQRTLRAPINPSMNMGMPHQRCRDFEERGFCLRG
DMCPMEHGINRIVIEDVQSLSQFNLPVTLPSAHMMGASAAPGPSSAVSAPSSTLGNGQGV
YSKSGKAGAENDGLGSNGDAIGSAVATGADFYDPDQPLWTNDSAQTSTELLSSDPTKVTR
GDNQSVPTHDQHIGLYSGSANERPVKNPVTALGSHSTNSSVRGQSSSLKNRVNSVQTVTT
NEDHVLDTVEDAVGHQGKMKNADDIVSHSMEAMKTLNSTARFIQKPSQKARCTLFVSGIP
QKDNRRDALLSHFQKFGEVINVYIPVNSERAFVQFSKREEAEDALKAPDAVMGNRFIKLW
WANRDNVPLVGMSTGGTVPLASSIVSATSVPDVPAVATKDVPKGGSSHELVSSLNSFDQL
KSVATNGPTAAMQKKVENLDYLKEIRKKQEMLDRKRSEFKRLLERMEKQKQAAGSKSELA
VEQAAKRPKVEIVADVQKAGSPVLVGSSSIVPSIQAELTDRSRTGRNTKPHSSDTSMVMA
LTESSSFKQSTRQQAPAGTPFVMNRFKLDNRPTSFKIVPPLPSGLANVAALKEHFSTFGE
LANLDLEDIELGDNTDETMKLNKCASVYFTTRHSAEKAFSNGKWWKGHSMQFIWLTSSNS
GKEDTGRENPSSPTKGSSDANGQPVGEGALLVSQKKPMSGDEESENSERRDKSSDHLGAD
DEMHSSLTPVSLEKQSSQG
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggatcagaggcttgtatttccaaagggtgacctttctcctcatgattctgctagcgat
cctgaggaaaaagaattcagtgatgacgacgatgatgatcgtaatcacaaacatcggaga
agagagacacagactcaatcactggaaagagatattggacaagcttcaacaaggccgtac
agaaaccggaacaagccctttgaaaatgggcatcctcatagggaatccgcttctcaatct
aatgaaacatggcgaaattacaacatgccacctctcgagaaagattttcctggaaagttt
gacagaagacgtcctggctcaacacctatttctcgagctcccttggatttgaaccagaga
ggcagggggaaccaatcatggactggtgatcctggatctggtagaggtagaggaagggaa
ccctggggtgtacgtgattctaggtttagctccctcgatttcaatcctgccatagctcaa
cagggttatgtcccttcaagtctatttgcaggacggggaatgtcaagtgtttcaaatcca
caaagtgcatcctggaccgcatttggattggttccgggattaccaaatggtggcttagat
agccttcatccccttggtttgcaaagaacacttagagcgcctattaatccttcaatgaat
atgggcatgcctcaccaaagatgtagggactttgaggagcgtggcttttgcttgagagga
gacatgtgtcctatggaacatggtatcaatcgaattgtcatcgaggatgttcagagcctt
tctcagtttaatctacctgttacacttccaagtgcgcacatgatgggtgcttctgctgct
cccggaccttcttctgcagtaagtgccccttcaagcacattgggaaatggacaaggtgta
tatagcaaaagtggcaaggctggagccgagaatgatggattgggttcaaatggtgatgct
attggatctgctgttgcaactggagctgatttttacgatcctgatcagcctctttggaca
aatgatagtgcccaaacttcaactgagctcctatcgtcagatcctacaaaggtcactcga
ggtgataatcaatcagtcccgactcatgatcagcatattggattgtacagtggttctgcc
aatgagcgtccagttaaaaaccctgtgactgctttaggatcgcatagtacaaattcatca
gtccgaggacaaagtagtagtttgaaaaatagggtaaattctgttcaaactgtcactaca
aatgaagatcatgtcttggacactgttgaagatgctgttgggcatcaggggaagatgaag
aatgcagatgatattgtttcacattccatggaagcaatgaagacacttaatagcactgca
cggtttattcaaaagccatctcaaaaggctagatgtactttatttgtcagtggtataccc
cagaaagacaatagaagagatgcccttttatcacattttcaaaaatttggggaggttatc
aacgtttatatccccgtaaacagtgagcgggcatttgttcagttttctaagcgggaagaa
gctgaggatgctttaaaggcaccagatgcggtaatgggcaatcgctttataaagctgtgg
tgggctaatcgtgacaatgttcctcttgttgggatgagcactggcggtactgtaccctta
gcttcttctattgtgtcagctacctcagttccagatgttccagctgttgcaaccaaagat
gttcccaagggcggtagttcgcatgaattagtttcatcattgaattcatttgatcagctt
aaatctgtggcgaccaatggtccaacagctgctatgcagaaaaaggtggagaatttagat
tatttgaaggagattcgcaagaagcaagagatgctcgataggaaacggagtgagtttaaa
cgtctattggagagaatggagaaacaaaaacaggctgcaggtagcaaatctgaacttgct
gtggaacaggcagctaaaagacctaaagtggaaattgtagctgatgtacaaaaagctgga
agtccagttttagttggttctagttctattgttccctcaattcaagctgaactgactgat
agaagcagaactggacggaatactaaacctcatagctctgataccagtatggtgatggca
ttgacagaatcttcaagctttaaacagtcaactcgtcagcaggcaccggcagggacaccc
tttgtaatgaatagatttaaattggataatcggccgacctcattcaagatcgttccacct
ctaccttctggtctcgctaatgttgctgctttgaaagaacatttctcaacatttggcgag
cttgctaatctggatctggaagatatagagcttggagataacactgatgagacgatgaaa
ttgaacaaatgtgcttctgtatatttcactactcgtcattctgctgaaaaggcattctct
aatggcaaatggtggaagggccacagcatgcagtttatatggctgacttctagtaactcc
ggcaaagaggatactggcagagaaaatccttcttctcctacaaaaggttcttcagatgct
aatggtcagcccgtaggagaaggtgcattgttggtttcccagaaaaaaccaatgtcggga
gatgaggaatctgagaattcggaacgaagagataaaagttctgatcacttgggggctgat
gacgaaatgcattcaagtttgaccccagtgtcattggagaagcagtcatctcaggggtga
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