Daucus carota (carrot): 108215202
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Entry
108215202 CDS
T05350
Name
(RefSeq) FACT complex subunit SSRP1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dcr03000
]
108215202
03036 Chromosome and associated proteins [BR:
dcr03036
]
108215202
Transcription factors [BR:
dcr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
108215202
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
108215202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108215202
NCBI-ProteinID:
XP_017243079
UniProt:
A0A161WUI6
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Position
3:47630733..47637955
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AA seq
644 aa
AA seq
DB search
MADGHLFNNISLGGRGGTNPGQLRVYSGGIVWKKQGGGKAVEVDKSDISGLTWMKVPRTN
QLGVISKEGLKYKFTGFRDQDVSSLTSFFQTSCGITPEEKQLSVSGKNWGEVDLNGNMLS
FLVGSKQAFEVSLADVSQTQLQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNSNTQFV
GDENCPPAQVFRNKIVSMADVTPGGEEAVVTFEGIAILTPRGRYNVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVVVSLDPPIRKGQTLYPHIVLQFETDYVVESTLSLS
DDLYNHKYKDKLEPTYKGLIHEVFTMILRGLSGAKLTRPGKFRSCQDGYAVKSSLKAEDG
VLYPLEKSFFFLPKPPTLILHDEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ
RNEYHNLFDFISSKGLKIMNLGGPQAADGVAAVLQNEDDDAVDPHLERIKNEAGGDESDE
EDEDFVAEKDDSGSPTDDSGGDDSDASVSGGEKEKPAKKEAKKEPSASSKAAASRKRTKD
GEEDSVKKKKPKKKKDPNAPKKPLSAFMFFSKNERENVKKTNPGISFTDVGRVLGERWNK
MSGEEKERYEADAKQDKKRYTDEMKGYNNPQATKADSGNDSDSD
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtcacttattcaacaatatctctctcggaggccgtggcggcactaacccg
gggcaactcagggtttattcaggcggtatagtgtggaagaaacaaggaggtggaaaggct
gtggaagtggacaagtctgatatatccgggcttacatggatgaaggttccacggactaat
cagcttggtgttataagtaaggaagggttgaaatacaaatttactggattccgtgaccag
gatgtgtctagcctcactagtttttttcaaacttcatgtggcataacacctgaagaaaaa
caactgtctgttagtggcaagaactggggagaagttgacctgaatggcaacatgcttagt
tttctagttggctcaaagcaagcgtttgaggtatccttagctgatgtatcccagacacaa
cttcaaggaaaaaatgatgtcatgctggaatttcatgtcgatgacactacaggggccaac
gagaaagattcgttgatggagataagtttccatatacctaattccaatactcagtttgtt
ggtgatgaaaactgtcctccagctcaagtctttcgcaataagattgtgtcgatggctgac
gtcacaccaggaggtgaagaagctgttgtcacttttgaggggattgccatccttactcca
aggggtcgctataatgttgaacttcatctttcatttttaaggcttcaagggcaagccaac
gattttaaaatccaatacagtagtgttgttcgcctctttttactgcccaagtctaatcag
ccacatacttttgttgttgtttctcttgatccacctatccgtaaaggccaaacgttgtac
ccacatattgttttgcagttcgagacagattatgttgtggaaagcacattgtcactaagt
gatgatctctataatcacaagtacaaagacaagttggaaccaacatataaggggctgatt
catgaagttttcactatgatattacggggtttgtctggtgccaaactcacaagaccagga
aagttccgaagttgtcaggatggttatgcagtgaagtcgtctttgaaagctgaagacggg
gtcctctatccgcttgagaagagtttcttcttcctcccgaagcctccaacacttattctt
catgacgagattgattatgtggaatttgagaggcatgctgctggagggtcaaacatgcat
tactttgatcttctgatcagactgaagactgaacaggaacatctattccgcaacatccag
agaaatgaatatcacaacttattcgacttcatcagttcgaagggtttgaaaatcatgaat
cttggtggtccccaagctgcagatggtgttgctgctgttttgcagaatgaagatgatgat
gctgttgatccacatcttgagaggatcaagaatgaagctggtggagatgagagcgatgag
gaggatgaagattttgtggctgaaaaagatgattctggttcacctacagatgattctgga
ggagatgattctgatgctagtgttagtggaggtgaaaaggagaaacctgctaaaaaagaa
gccaagaaggagccttcggcatcttccaaggcagcggcaagtaggaagagaacgaaagat
ggcgaggaagatagtgtaaagaagaagaaaccaaagaagaaaaaagacccaaatgcacca
aagaagccattgagtgccttcatgttcttctccaagaatgaaagggagaatgtgaagaag
acgaatcctggaattagcttcacagatgttggtagagtcctcggagaaagatggaacaag
atgtcaggcgaggagaaagaaagatacgaagcagatgctaagcaagacaagaaacggtat
acagatgaaatgaagggatacaataacccccaggcaacgaaagcagattctggaaatgat
tctgacagtgattag
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