Daucus carota (carrot): 108215247
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Entry
108215247 CDS
T05350
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108215247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108215247
03110 Chaperones and folding catalysts [BR:
dcr03110
]
108215247
03029 Mitochondrial biogenesis [BR:
dcr03029
]
108215247
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108215247
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108215247
Messenger RNA biogenesis [BR:
dcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108215247
Chaperones and folding catalysts [BR:
dcr03110
]
Heat shock proteins
HSP60 / Chaperonin
108215247
Mitochondrial biogenesis [BR:
dcr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108215247
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108215247
Exosomal proteins of other body fluids (saliva and urine)
108215247
Exosomal proteins of breast cancer cells
108215247
Exosomal proteins of colorectal cancer cells
108215247
Exosomal proteins of bladder cancer cells
108215247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
108215247
NCBI-ProteinID:
XP_017243147
UniProt:
A0A169WGY2
LinkDB
All DBs
Position
3:63632400..63637644
Genome browser
AA seq
580 aa
AA seq
DB search
MYRFATKLASKSLIAKNANQQFASRLAWSRNYAAKDIKFGVEARAMMLRGVEELADAVKV
TMGPKGRNVVLEQSYGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDVAGDGT
TCATILTRAIYSEGCKSVAAGMNAMDLRRGINMAVDAVVTNLKSRARMISTSEEIAQVGT
ISANGDREIGELIAKAMEKVGKEGVITIADGKTLYNELEVVEGMKLDRGYISPYFVTNPK
NQKCELDDPLILIHEKKISNLTAVVKVLELALKKQRPLLIVSEDVESEALATLILNKLRA
GIKVCAIKAPGFGENRKASLQDLAVLTGGTVITDELGMTLEKVGIEMLGSCKKVTISKDD
TVILDGAGDKKAIEERCEQVRSSIELSTSDYDKEKHQDRLAKLSGGVAVLKIGGASELEV
GEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELNNLQAANFDQKIGIQIIQSALKA
PVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA
SVSSLLTTTEAVIVELPSDDKDIAAAGGMGGMGGMGGMGF
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcttcgccaccaagctcgcttccaaatctctgatcgctaagaacgctaatcaa
cagtttgctagtagactggcttggagtcgcaattatgctgcgaaagatattaaatttggc
gtcgaagctcgagcgatgatgcttcgaggtgtggaggagcttgctgatgctgttaaagtt
accatggggcctaaagggcgcaatgttgttttggaacaaagttacggggctcctaaagtg
acaaaagacggtgtcactgttgcaaagagtattgagtttaaagatagagtgaaaaatgtt
ggtgctagccttgtaaagcaggttgccaatgctacaaatgatgttgcaggggatggtacc
acctgcgccacaatcctaacgcgtgcaatatactcagaagggtgcaaatctgtggcagca
ggaatgaacgcaatggatctcagacgtggaatcaatatggctgttgatgctgttgtcaca
aacttgaagagcagagcacggatgatcagtacatctgaggaaatagctcaggttggcaca
atatcagcaaatggagatagagaaattggggaactcattgccaaggccatggaaaaagtc
ggcaaagagggggttattaccattgctgatgggaaaactctatacaatgaactagaagtg
gttgagggaatgaagctggacagaggctacatttctccttatttcgtaaccaatcccaaa
aaccaaaaatgtgaattggatgatccattgattttgatccacgagaaaaaaatatccaac
ttgactgctgtggtgaaagtgcttgagttggccttgaagaaacaaagacctttgttgata
gtttctgaagatgtcgaaagtgaagctttagcaactcttatattgaacaagcttcgagct
ggaataaaggtttgtgccattaaagctcctggatttggagagaacaggaaagcgagtttg
caagaccttgcggtcctcactggaggcacagttataaccgatgagcttgggatgactctt
gaaaaagttggaattgaaatgctcgggtcttgcaagaaggttaccatatcaaaggatgat
actgttatccttgacggggcaggtgataaaaaagctatcgaagaacgatgtgagcaggta
agatcatcaattgagttgagcacttctgattatgacaaggagaagcatcaggataggtta
gcgaagctttccggaggtgttgctgtcttaaagattggaggagccagcgaacttgaggtt
ggtgaaaagaaagacagagtaactgatgccttaaatgctacaaaggcagcagttgaagaa
ggaatagtacctggtggtggtgtagctcttctttatgcctcgaaagaacttaataacctg
caggctgccaattttgatcaaaagattggtattcaaataattcaaagtgctcttaaggca
cctgtgcatacaattgcttccaatgctggagttgagggagctgttgtggtgggtaagctt
ttggagcaggatgatcctgatcttggatatgacgctgctaaaggcgaatatgtggacatg
gtcaaggctggtatcatcgacccattgaaagtcattaggacagctttggtagatgctgca
agtgtctcgtctttgttgactacaactgaggccgtcatagtagaacttccaagtgatgac
aaggatattgcagcagcaggtggcatgggaggcatgggtggaatgggcggcatgggtttc
taa
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