Daucus carota (carrot): 108215522
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Entry
108215522 CDS
T05350
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108215522
03015 mRNA surveillance pathway
108215522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108215522
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108215522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108215522
NCBI-ProteinID:
XP_017243488
LinkDB
All DBs
Position
4:43197829..43204060
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AA seq
391 aa
AA seq
DB search
MAKPVRRRSPSGSISGSSRSRSRSISSRSSSRSRSRSRSFTSSSSRSRSLSSRSPSPNRR
VKSPAEGAKRGRSPQVKKATPPPPPPRKVSPVPQSLKLCIRQLSRNVNENHLREILGNFG
EVVSVKLEIDHRANLSKGFGYVEFKSRAEAEKAQAYMDGAQIDGNIVQANFTIPARITPP
KAVAASRRDASRNDNLTVDAEKDGPKRQRELSPRRKVSPSRRRSPVARRRSPRRDMDSSP
RRRDSPIRRRMNSPYRHGNSPPPRRKPASPFRGRSPSSPARRASPSRIRGRRSPPPQRRH
SPRRARSPPRRSPVPRRRTRSPMRRPIRSRSRSNSPRRGRAPPGRRGRSSSSSRSPSPRK
VVRKISRSRSPRRRGRSSSNSGSSSSPPPKP
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccagtacgacgtcgttcaccttcaggctcgatttcaggctcgtctcgctca
cgttctcgttcaatctcctctcgctctagctcccgctctcgttctcgctctagatccttc
acttcctcctcgagccgctctcgaagcctcagttctcgcagtccctctcccaatcgtcgc
gtgaaaagtcctgctgaaggagctaaaagaggccgttccccacaagtgaagaaagcaact
ccaccaccaccaccccctaggaaagtttctcccgttccccagtcacttaagctttgcatt
cgccagctctcaaggaacgtgaatgaaaatcatttgagagaaatacttggtaattttggt
gaagttgtaagtgttaaactggaaatagatcatagagctaacctttcaaaagggtttggt
tatgtggaattcaagtcgagagctgaagctgaaaaagcccaggcatacatggatggagct
caaattgacggtaatattgttcaagctaatttcacaatacctgctcggataacacctccg
aaggctgttgctgcttcaagaagagatgcttccaggaatgataatcttactgttgacgct
gaaaaggatggaccaaagcggcagagagagttatccccacgtcgtaaagtttcaccttcg
cgaaggagatcacctgtggcccgaagaagatccccaagaagagatatggattcatctcca
aggcggcgtgattctcccattcgtcgccgcatgaattccccttatcgtcatggtaattca
ccaccgcctaggagaaagcccgcatctccatttagaggtcgctcaccatcctctccggca
aggagggcctctccgtcaagaattcgtggtagacgttctcctccaccccaaaggcgacat
tcccctagacgagctcgcagccccccgaggagatctcctgttcctcgtagacgtacccgt
tctccaatgcgaagacctattcgttcacgttctagatcaaactccccacggagaggtcga
gctccacctggaagacgtggaagatcatcatctagttctagatctcctagcccacgcaag
gttgttcggaagatttcaaggagtcgtagtcctagaaggagaggaagaagcagtagcaac
agcggtagcagcagttcaccacctccaaagccttga
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