Daucus carota (carrot): 108215523
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Entry
108215523 CDS
T05350
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108215523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108215523
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108215523
mRNA degradation factors
5'-3' decay
Decapping complex
108215523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
Motif
Other DBs
NCBI-GeneID:
108215523
NCBI-ProteinID:
XP_017243489
UniProt:
A0AAF0X118
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Position
4:complement(45711164..45718100)
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AA seq
368 aa
AA seq
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MSNQSGKLMPNLDQQSTKVLNLTVLQRMDPYIEEILITAAHVTFYGFNIDLNQWSRKDVE
GSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEFELQVPYLLYRNASQEVNGIWFYN
SRECEDVANLFTRILNAYAKVPPKPKVSSNKSEFEELEAVPTSAVIEGPLEPSFTQSPST
DIPDDSSFVNFFSTAMNIGHGASNVMNSGQVTNVPLSSRVANVAPTPAPAPVVQTPPLPH
AASSSYQMPLHDTPDPVNSSNRVTNLLKPSSFFTPPSSSSALMTPLITSSVPTATLQPPL
NTQRSHGAPMLQPFPPPTPPMSLTPNPAAVANYGPLSRDQVRDALLVLVQDNQFIDMFYQ
ALMKVHRS
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcagagtggaaaattgatgcccaatcttgaccaacagagcacgaaagtcctc
aatctcaccgtgcttcaaagaatggatccttatattgaagagatcttgattactgctgct
catgtcaccttttatggcttcaatattgatcttaatcaatggagtcgcaaggatgttgaa
ggttctctttttgttgtcaagaggaacactcaaccacgattccagtttatagttatgaac
cgacgcaatacagaaaatctcgtagaaaatcttcttggagattttgagtttgaactacaa
gttccatatcttctgtatcgtaatgcctcccaagaagtgaatggtatctggttctataat
tcacgtgaatgtgaagatgtagctaatttgtttacaaggatactaaacgcatatgccaag
gttcctcccaagcctaaagtatcatcaaacaaaagcgagtttgaggaactagaggcagtg
ccaacctctgctgtgattgaagggcctctagaaccatcttttactcaatctccttcaacg
gacatacccgatgattcgtcctttgtgaacttcttcagcactgctatgaatatagggcat
ggtgcttcaaatgttatgaattcgggacaagttactaatgtccctttatcttctcgtgtt
gcgaatgttgctcctactcctgcacctgcacctgtagtgcaaactccgcccctccctcat
gcagcttcatcttcttatcagatgccccttcatgatactcctgatccagtcaacagtagc
aaccgtgttaccaatcttctgaaaccatcttctttctttacgcccccttcctcctcttct
gcactgatgaccccgcttataacttcgtctgtgcctactgctaccctgcagcctcccctg
aatacacagcgatcacatggagctcccatgctccagccttttccaccacctaccccacca
atgtctttaactcctaatccagcagccgtggcaaattatggaccattaagcagagatcaa
gtccgtgatgcgcttttagtgcttgttcaggacaatcaattcattgacatgttttatcaa
gcactgatgaaagttcatcgatcatga
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