Daucus carota (carrot): 108215545
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Entry
108215545 CDS
T05350
Name
(RefSeq) serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108215545
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dcr01009
]
108215545
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108215545
03036 Chromosome and associated proteins [BR:
dcr03036
]
108215545
Protein phosphatases and associated proteins [BR:
dcr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108215545
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108215545
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108215545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
DUF6985
Motif
Other DBs
NCBI-GeneID:
108215545
NCBI-ProteinID:
XP_017243517
UniProt:
A0A165Z7H8
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All DBs
Position
4:complement(49375187..49378724)
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AA seq
542 aa
AA seq
DB search
MFKQILGKLPRKTSSKSSRSNLSNEGVFNSVSLAGGVSNSSQSNSGSRKAVNSGSGGSRP
SNGTHVQEPMSTSVKSEQGKKVGLMGSQADQRRENVVYEALPSFKDVPNSEKHNLFVKKL
SMCCIVFDFTDPSKNLKEKDIKRQTLLELVDYISSVTSKFNEITMQEITKMIAVNLFRAL
PNHDNKVLDVYDPEDDEPTLEPSWPHLQIVYEFLLRFIASPETDAKLAKRYIDQSFILRI
LDLFDSDDQREREYLKTILHRIYGKFMVHRPFIRKSINNVFFNFIFETGHHNGIAELLEI
LGSIINGFALPLKEEHKLFLVRALIPLHKPKSISVYHQQLSYCIAQFVEKDCKLADPVIR
GLLKYWPITNSSKEVMFLGELEEVLEATQAAEFQKVMVPLLRQIGRCLNSSHFQVAERAL
FLWNNDHIRTLITQNRRVILPIIIPALESNTRSHWNQAVQSLTLNVKKVFSDADQALFDD
CLSKFEEYQIKEKETLSKRLSTWKRLEDVAASKAGSNGGLLDSSFASVAISASTNCQTAA
GS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagcagatattaggtaaacttcctcggaagacatcgtcaaaatcttcgcgtagt
aatttgagcaatgagggtgtgtttaattctgtgagcttggctggtggtgttagtaatagt
tctcagagtaattctggttctaggaaggcggttaattcggggtcgggaggttctcgtcct
agtaatggaacacatgttcaagaaccaatgagtactagtgttaaatcagagcaaggaaag
aaggtaggtctgatgggttcacaagctgatcaaaggagggaaaatgtggtttatgaagct
ttgcctagctttaaggatgttccgaactctgaaaagcacaatctttttgtaaagaagttg
agtatgtgctgtattgtgtttgattttactgatccctcgaaaaatctaaaagaaaaggat
attaagcgacaaactttgcttgagcttgttgactacatttcatcagtgacgtctaagttc
aatgagattacaatgcaggaaatcacaaaaatgattgctgtgaatttgtttcgagccttg
ccaaatcatgacaataaagtactggatgtgtatgacccagaggatgacgaaccgactttg
gagccgtcatggcctcatctccaaattgtgtacgaatttcttttgagatttattgcttcc
ccggagactgatgcaaaactggctaaaagatacattgaccaatcttttattttgagaata
cttgacctctttgactcagacgatcaaagagagagggaatacttaaagacaatccttcac
cgcatatatggaaagttcatggtgcatcgtccatttattaggaaatccattaataatgta
ttctttaattttatatttgagacaggccaccataatggtatcgctgaattgcttgaaatc
ttgggtagtattattaatggttttgcattgcctttgaaggaagaacacaagctattcctt
gtccgtgcactgattccccttcacaaacccaaaagtatatcagtgtatcaccaacaactt
tcgtattgcattgcccaatttgttgagaaagactgtaagctggctgatccagtgatccga
ggtctgttgaagtattggccaataactaatagttcaaaagaggttatgttccttggcgag
ctagaagaagttctcgaagctacccaagctgccgaatttcaaaaggtcatggttccattg
ttacgtcagattggtcgttgcctcaacagctcacactttcaggtagctgagcgtgcatta
ttcctatggaataatgatcatatacggactctgattacccagaatcggagggttatacta
cccataatcatcccggccttggaaagcaacaccaggagtcactggaatcaagctgttcaa
agcttaacccttaatgtgaagaaagtcttttcagatgcagatcaggctctttttgatgac
tgcctatccaagttcgaagaatatcaaatcaaggaaaaagaaacattaagcaaaaggtta
tccacctggaagcggctggaagatgtcgccgcatccaaggctgggagcaacgggggtttg
ctcgactcaagttttgcttctgtcgcaatatctgctagcacaaattgtcagactgccgca
ggtagttga
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