Daucus carota (carrot): 108215736
Help
Entry
108215736 CDS
T05350
Name
(RefSeq) N-glycosylase/DNA lyase OGG1 isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108215736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108215736
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
108215736
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
108215736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
HHH_5
INI1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
108215736
NCBI-ProteinID:
XP_017243781
LinkDB
All DBs
Position
4:complement(37914717..37919514)
Genome browser
AA seq
406 aa
AA seq
DB search
MQQSTWLGFMLISNLRGCLLQSLTRFHPIMKKRSTPISSSPSTPPPSSPQTLKTKQPFSQ
NSSKNPKRALLTTPPSSISPKWVPLNISKSELFLPLTFPTGQTFRWKQTGPLEFTGAVGS
HLVSLKHLDNGDIAACFHHSKDGVFDAKLALLDFLNVGICLSDLWEEFSGSDSRFAQLAP
YLGGARVLRQDPLECLLQFICSSNNNIKRITQMVDFISGLGVYLGTVEGFRFYEFPTLDR
LSIVSEEELRVAGFGYRAKYITRTVDALRAKPGGGVEWLASLRDLDLQMAIDALSTLPGV
GPKVAACVALFSLDQHHAIPVDTHVWQIATTYLIPELAGTRLTPKLYGRVSEAFVCKYGK
YAGWAQTLLFIAELPSQKALIPSILWTTAEKKPSKPRKKKRNLEDI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagagcacttggctcggattcatgctaatttcaaatttgagaggttgtttactg
caatcactcacaagatttcacccaattatgaagaagagatcaacacccatttcatcctca
ccttcaacaccacccccttcatctccacaaaccctaaaaaccaaacaacccttctcacaa
aattcatccaagaaccctaaaagagcccttttaacaacacccccatcttcaatttccccc
aaatgggtcccactcaacatctcaaaatccgagcttttcttgcccctcactttccccact
ggccaaacattcaggtggaagcagactggcccacttgagttcacaggggctgtggggtcc
cacttggtgtccctcaagcaccttgacaatggtgatattgctgcttgctttcatcactca
aaagatggggtctttgatgctaagttggcgttgttggatttcttgaatgtgggtatttgt
ttgagtgatttgtgggaggagttttcgggttcggattcgaggtttgctcagttagcacct
tatttgggaggtgctagagtgcttagacaggacccactggagtgtcttctgcagtttatt
tgttcttcgaataataatattaagaggattactcaaatggttgatttcatttcggggtta
ggggtttatttggggactgttgagggatttaggttttatgagtttcctactttggatagg
ttatcgatcgtttctgaagaagagcttcgagtggctggttttggatacagggccaaatac
ataactcgcacagtagatgctttgcgagcaaagcctggaggaggagttgagtggcttgct
tctctccgtgacttggatcttcaaatggctattgatgctctatctaccctacccggtgtg
ggtcctaaagtagctgcatgtgttgctctcttctctctagatcagcatcatgctattcct
gttgatactcatgtctggcagattgctactacatacctcatcccagagcttgccggcacc
cgcctgacgcctaagttatatggtcgcgtgtcagaggcgtttgtctgcaaatatgggaag
tatgctggttgggcccaaacacttcttttcattgcagagctgccttctcaaaaagcacta
ataccatctatcttgtggactaccgcagaaaagaaaccttctaagccaaggaaaaagaag
agaaacttggaagatatttga
DBGET
integrated database retrieval system
