Daucus carota (carrot): 108215907
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Entry
108215907 CDS
T05350
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108215907
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108215907
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
108215907
NCBI-ProteinID:
XP_017244017
UniProt:
A0AAF0WZV4
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Position
4:50063499..50068105
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AA seq
659 aa
AA seq
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MQKIYFSLYIFCIYLNSFVSSAAVELHVSDDQVVMYNDFLQLTFTKPAGHIIGIQYNGID
NLLELHNPELNGGFWDLNWSDPESTQTRGKFDMINGTNFEIILQNEEQVELSFKRTWDSS
FEDEHSPLEIDKRFIMLSGSSGFYSYAIYEHREDMPSFSLNEARLVFMLTKEKFHYMAMA
DNRQRFMPLPDDRLPGRGQELAYPEAVLLVNPVEPEFTGEVDDKYQYMCENKDNKVHGWI
SLDPLVGFWQITPSNEFRTCGPLKQDLTSHVGPVNLAMFVSAHYGGVDVVLNFKSGEPWK
KVFGPVFIFLNTSSDKENAVPVLWENAKEQMRTEVQSWPYHFPLSEDFPQSDQRGSISGT
LLVDDSYVSNDHILAVGAHVGLAPPGEVGSFQREGKGYQFWTNTNDEGHFHIENIRPGVY
NLYAWFPGFIGDFRWEKLITVTQGGSIDVGTLVYKPPRDGPTLWEIGTPDRSAAEFFVPD
PDPKYINKLYVNHPDKFRQYGLWERYADLYPDKDLVYTVGISQYHKDWFYAQVTRKVDND
LYTGTTWQIKFQLEKVDQAGVYKLRLALASATFSILEVRVNDEEANPPVFSTGSIGKDNA
IARHGIHGLYWLFNVDIHSTQLFEGENTIFLKQANGSKFQFGVMYDYIRLEGPALSSEN
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatctatttcagcttgtatattttctgtatttacttaaattcctttgtgtca
agtgcagcagtagaattgcatgtttcagatgatcaagtggtgatgtataacgacttcctt
caactcacatttacgaagccagcaggtcacatcattggaattcaatataatggaatcgac
aatttgctagagcttcacaatccagagttgaatggagggttctgggaccttaattggagt
gaccctgaaagtacacaaacaagaggaaaatttgatatgataaacggaacaaactttgag
attattctgcagaatgaagaacaggtagaactctcattcaaaagaacatgggattcgtca
ttcgaggatgagcattcccctctagagattgataaaaggttcattatgctgtctggttct
tcaggcttctactcttatgccatatacgaacatcgagaggacatgccttccttcagcctc
aatgaagcaaggctggtgtttatgctcacgaaagaaaagtttcactacatggcaatggca
gataatagacaaagattcatgcctcttccagatgacagattaccaggaagaggtcaagaa
ttggcctatccagaagcggtcctccttgttaaccctgtggagccagaattcacaggcgag
gtggatgacaagtaccaatacatgtgtgaaaacaaagataataaggtccatgggtggata
tctcttgacccgcttgtaggattctggcaaatcacaccctctaatgagttcagaacatgc
ggacctctcaaacaggacttaacctctcatgtcggccccgtgaatcttgctatgtttgta
agtgctcattacgggggtgtggatgtagtgctcaacttcaaatctggtgaaccatggaag
aaagtcttcgggcctgttttcatttttcttaacaccagttcagataaggagaatgctgtt
ccagtactctgggaaaatgccaaagaacagatgagaactgaagtccaaagctggccgtac
catttcccattgtcagaagacttcccacagtctgatcaaaggggtagtatcagcggcacc
ttactagttgatgacagctatgtcagcaacgaccatatacttgcagttggtgctcacgta
ggattagctccacctggagaagtcggatcatttcaaagagaaggcaagggctaccagttc
tggaccaacacaaatgatgaaggccacttccatattgagaatatccgccccggagtttac
aatctttatgcatggttccctggttttattggtgatttccgatgggaaaaactcattaca
gtaacacaaggtggaagcattgatgtaggcacactagtctacaaacctccaagagatgga
cctaccttgtgggaaatcggcactcctgatcgctctgctgctgaattttttgttcctgat
cccgatccaaaatatataaataaactctacgtcaatcatcctgacaagttcagacagtat
ggtttgtgggagagatacgcagacctatatccggataaagacttggtctacacagttggt
attagccagtatcacaaagattggttctatgctcaggtgactaggaaagttgataatgac
ctgtatactggaactacatggcaaattaagtttcaacttgaaaaggttgatcaagccgga
gtctacaaacttcgactggctcttgcatcagcaacgttctccatattagaggtacgagtg
aacgatgaagaggcgaatccaccagtcttctcaactggttcaataggaaaggacaatgca
attgctcgacatggaattcatggactttactggttgttcaatgtggatatacactccact
caacttttcgaaggtgaaaataccatatttttaaagcaagcaaacggaagtaagtttcag
ttcggggttatgtacgattacattcgtttagagggccctgcattgtcctcggaaaattga
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