Daucus carota (carrot): 108215909
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Entry
108215909 CDS
T05350
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108215909
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108215909
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
Endotoxin_C
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
108215909
NCBI-ProteinID:
XP_017244019
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Position
4:50057559..50063358
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AA seq
642 aa
AA seq
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MGMLLHAQDDYIVIDNGVIQITLTNPGGNLTRIQYSGIDNVLETHNKELNGGFWDLNWSE
AGSRKNRGKFDTITGTSFKIIVENEKQMELSFTRPWDPSDQGEHAPLYIDKRFVILRGVS
GFYSYAIYKHLKDMPAFNLNTSRIAFMLSKDKFHYMAVADNRQRYMPLPDDRLPGRGEEL
AYPEAVRLVDPVEPEFIGEVDDKYQYSIENKDNRVHGWICFDPPVGFWQITPSNEFRNGG
PLKQDLSSHVNPTTLAIFLTSHYAGEDLLVKLGAGEEWTKVLGPVFIYLNSVPSAANALS
LWEDAKEQMIKETNCWPYNFLASDDFPCSDYRGTLRGRLLVYDRYIAEFDAPAALAFVGL
AAPGDAGSWQRESKGYQFWTKANECGEFTIGNVRAGSYNLFAWVPGFIGDYQCDIEICIT
PGCDIDMGDFVYEPPRDGPTMWEIGIPDRSAAEFYIPDPNPKYINKLYVNHPDRFRQYGL
WERYAELYPDEDLVYTVGVSDYTKDWFFAQVNRKIGDRTYKTSTWQIKFEVLNIERSKNY
KLRLALASAHHSDLQVRINDPEGDNPLFSTGEIGDDNAIARHGIHGLYWLFTVDIPGDQL
VEGEINTIYLTQSKNSSPFQGIMYDYIRLEAPSPENTKAASY
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgctgttgcatgctcaagatgattatatagtgatagataatggagtaatccag
atcacattaaccaacccgggaggaaatctaaccagaatacagtacagcggaatagataat
gtacttgaaacgcataacaaagaattgaatggcgggttttgggaccttaactggagtgaa
gctggaagtcggaagaatagggggaaatttgatacgattactggcactagttttaagatt
atagtagaaaatgagaagcagatggaactctcatttacaagaccatgggatccttcggat
cagggtgagcacgcccccttgtatatagacaaaaggtttgtgatattgcgcggcgtctca
ggattttactcctacgccatatataaacatttgaaggatatgccagcctttaatctcaac
acgagcaggatagccttcatgctcagcaaagacaagtttcactatatggctgtagcagat
aacaggcaaagatacatgcctctcccagatgatcggctgccaggtagaggagaagagcta
gcctaccctgaagcagttcgacttgttgatccagttgagcctgaatttataggggaggtt
gatgacaagtaccagtactccattgagaacaaagataatcgtgttcatgggtggatatgc
tttgacccaccagttggattttggcagatcacaccaagcaacgagttccgcaatggaggg
ccattaaaacaagatttaagctctcatgtgaatccaacaaccctagcgatattcttaact
tctcattacgctggagaagatcttctggtaaaacttggagcaggggaagagtggacaaaa
gttcttggcccagtttttatctatttaaattctgtaccaagtgctgctaatgcactttcc
ctttgggaagatgcaaaagaacagatgattaaagaaaccaactgctggccctataatttc
ctagcctcagatgattttccctgttcagattatagaggcaccttgaggggcagattgcta
gtttacgacaggtatattgctgaattcgatgctccagcagcccttgcatttgtggggttg
gccgcaccaggagatgctggatcatggcaaagagaaagcaagggttaccaattttggact
aaagctaatgaatgtggcgaatttaccattggcaatgtacgtgctggaagttacaatctt
tttgcatgggtgcctggttttataggggattatcaatgtgatattgaaatttgtataaca
ccaggttgtgacattgacatgggtgattttgtgtacgaacctccaagagatggtcctacg
atgtgggaaattgggattcctgatcgttctgcagcagaattttacattcctgaccccaac
ccaaaatatatcaacaaactctatgtcaatcatccagacaggtttaggcagtatggcctt
tgggaacgatatgcagaattatatccggatgaagacttagtttatacagttggggttagt
gactacacaaaagattggttctttgctcaggtcaataggaaaataggagatagaacttac
aaaaccagtacatggcagatcaagtttgaagttctgaacatcgaaagatctaaaaactac
aaattacggctggcacttgcatctgcacatcattctgatttacaggtaaggattaatgat
cctgaaggcgacaatcctctgttttcaactggagaaatcggggacgataatgcaattgcc
aggcatggaatccatgggctctactggctgtttactgtagacattccaggtgatcaacta
gtggaaggggaaataaacaccatatatttgacacaatcgaagaacagcagtcctttccag
gggattatgtacgattacatccgtttagaagctccttctccagaaaatacgaaagctgca
tcttactag
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