KEGG   Daucus carota (carrot): 108216068
Entry
108216068         CDS       T05350                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03030  DNA replication
dcr03410  Base excision repair
dcr03420  Nucleotide excision repair
dcr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108216068
   03410 Base excision repair
    108216068
   03420 Nucleotide excision repair
    108216068
   03430 Mismatch repair
    108216068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dcr03032]
    108216068
   03036 Chromosome and associated proteins [BR:dcr03036]
    108216068
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108216068
DNA replication proteins [BR:dcr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108216068
  DNA Replication Termination Factors
   ELG1-RFC complex
    108216068
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108216068
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108216068
  Check point factors
   HRAD17(Rad24)-RFC complex
    108216068
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_22 RsgA_GTPase DUF815 RuvB_N AAA_5 Mg_chelatase ABC_tran AAA_23 AAA_29 AAA_2 AAA_16 nSTAND3 TsaE AAA_24 SprT-like POC1
Other DBs
NCBI-GeneID: 108216068
NCBI-ProteinID: XP_017244223
UniProt: A0AAF0WYJ9
LinkDB
Position
4:45163850..45168863
AA seq 354 aa
MLWVDKYRPRSLDKVIVHQDVAQNLKKLVSEQDCPHLLFYGPSGAGKKTLIMALLRQMFG
ASVEKVKVENKNWKVDAGSRTLDLELTTLSSTHHVELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRINAPKEEEIVDVLEFIGRKEGLQLPSGFAARIAEKSNRSLRRAILSFETCRVQQY
PFTNNQLIPAMDWEVYVLEIASDIMKEQSPKRLFQVRGKVYELLSNCIPPEIILKRLLFE
LLKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKGFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtagacaagtacagaccaagatccctcgacaaagtcatcgttcaccaagat
gtcgctcaaaatctcaagaaactggtttcggagcaagattgcccccatttgctgttttat
ggtccttccggggcggggaagaaaaccctaattatggcgttgctgagacagatgttcggg
gccagtgtcgaaaaggtcaaggttgagaacaagaattggaaagttgatgctggaagcaga
actcttgatctagagcttacaacattatccagtacccaccacgtggaactaaaccccagt
gatgcaggcttccaggacagatacattgttcaagagataatcaaggaaatggcaaagaac
agaccgattgacacgaaaggaaagaaaggatttaaagtactggtgcttaatgaggttgac
aagctctcaagagaagcacagcattctctacgaagaacaatggagaaatacagtgcatca
tgccgccttatactgtgctgcaacagctcttcaaaggtcaccgaagcagttcgttctcgt
tgtttgaatgtacgaattaatgctccaaaggaagaagagattgtagacgttttagaattc
atcggcaggaaagaggggctgcaacttccgtctggatttgctgctcgcattgcagagaag
tcaaatcgaagtttaaggagggctatattatcatttgagacatgccgagtccaacagtat
ccatttacgaacaatcagttaatacctgcaatggattgggaggtatatgtactggagata
gcatcagatattatgaaggagcagagccctaaaaggttgttccaggttcgtgggaaggtg
tatgagcttttaagtaactgtattcctccagaaattattttaaagaggctgctttttgag
ttattgaaaaaattggattctgaactaaagcatgaagtttgtcactgggctgcatattat
gaacacaggatgcgtctcggacagaaagccatatttcacattgaagcatttgtcgccaag
ttcatgagcatctacaaaggcttcctcatctcaacatttggataa

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