KEGG   Daucus carota (carrot): 108216461
Entry
108216461         CDS       T05350                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108216461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108216461
   03036 Chromosome and associated proteins [BR:dcr03036]
    108216461
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     108216461
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     108216461
    COMPASS/SET1 complex (yeast)
     108216461
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta EIF3I Beta-prop_WDR36-Utp21_2nd WDR55 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_SPT8 PAC11 Beta-prop_WDR36-Utp21_1st WD40_RFWD3 TRM82_WD NBCH_WD40 Beta-prop_NOL10_N Beta-prop_VPS8 WD_LRWD1
Other DBs
NCBI-GeneID: 108216461
NCBI-ProteinID: XP_017244715
UniProt: A0A165WQH1
LinkDB
Position
4:complement(31665173..31670538)
AA seq 325 aa
MVEVNQLSDDTVRNMSIGALFSDFAGKIFSLDFHRTADLLVTASEDDSVRLYDIANAKLL
KTTYHKKHGADRICFTHHPSSVICSSRYNLDSTGESLRYLSMYDNRCLRYFKGHKERVVS
LCISPINDSFMSGSLDHSVRIWDLRVNACQGLLRMRGRPAVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFETFLVGGDMAEVCDIKFSNDGKSMLLTTRKNNTYILDAYGGEKRGVFS
LDPSPDTELEATFTPDGQYVISGSGDGTMHAWGINSGNKVGSWDSKIGVVSCLKWAPRRV
MFAAAASSVLTFWIPDESKSGKPQN
NT seq 978 nt   +upstreamnt  +downstreamnt
atggtggaagtgaatcaactgagtgacgacactgtccgcaacatgtccattggagctctc
ttctccgatttcgctgggaagattttttcacttgattttcatcgcactgcagatttactg
gttacagctagtgaggatgattcggtgcgcttgtatgatatcgcaaatgccaagttgctg
aaaaccacatatcacaagaaacacggtgctgatcggatatgctttactcaccaccctagt
tctgttatatgctcttcaagatataatttggattcaactggggaatcccttcggtatctg
tctatgtatgacaaccgttgccttcgttacttcaaagggcacaaggagagagtggtgtcc
ctttgtatatctccaattaatgacagctttatgtctggttcacttgaccatagtgtgaga
atatgggatcttcgtgtaaatgcctgtcagggacttttgcgaatgagaggtcggcccgca
gttgcctatgatcagcaaggccttgtgtttgctgtagcaatggaagggggtgctattaaa
ttgtttgactctcgttcatatgacaagggcccattcgagacatttttagttggcggagac
atggctgaggtctgtgatattaaatttagcaatgatggtaaatcgatgctcttgaccacc
agaaagaataatacatatattcttgatgcgtatggaggggaaaagcgaggcgttttcagt
ttggatccatctccagatacagaattagaagcaacatttaccccagatggccagtatgtg
atatcaggttcaggggatggaactatgcatgcttggggcataaacagcggcaataaggtg
ggatcctgggacagcaaaattggagttgtatcatgcttgaaatgggcacctagaagggtg
atgtttgctgctgctgcttcttcagttctcactttctggattcctgatgaatccaaatcc
ggaaaacctcaaaactga

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