Daucus carota (carrot): 108217076
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Entry
108217076 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108217076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108217076
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108217076
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108217076
mRNA degradation factors
3'-5' decay
Ski complex
108217076
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
108217076
NCBI-ProteinID:
XP_017245415
LinkDB
All DBs
Position
4:25444220..25471676
Genome browser
AA seq
1358 aa
AA seq
DB search
MDRIDVANELPFRVGFTGHSGHLRIEPLPPVQSSDPLHSLPDFILPPAFPTETPESIKEY
IEEKYLLPRLDADDFSPDKDGRQWEFDWFDKAQVNLEPSVPRSVVVPKWELPFRRSTTRT
MSKMWDPSSMQVDVAELMEGSEDSGVLPRISGPAKDFVRGSINSRPFRPGGLDNSQTIGR
ILPEGATSGDWVREVLTGGASQSLPPSFRQGMDFGNLKAHSHSWNVHGDQGEAKSTSDAK
TQLSVQFDDLFKRAWEDDFDESAKSGVVVPGDEPAVEDFNKTDSFPPEIERISPNESESC
LVVETSVLDEILSVGSGNLASGLIEGSSTSGQQQKEAWAVSGGSESIAERFHDLIPDKAL
DFPFELDAFQKEAIYYLEKGDSVFVAAHTSAGKTAVAEYAFALASKHCTRAVYTAPIKTI
SNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVH
YVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKQIRVTGTTRRPVP
LEHCIFYSGEFYKVCENEKFLSLGFKAAKDAYKKKSMSTGGGSGKSYSGSSVSHDVARTQ
KRESTFRSKQNKQSGPQNLGSSSGSGWGHQNSGGSQNNWGSRRSEASLWLLLINKLTKLA
LLPVVIFCFSKNRCDKSADHMNGVDLTSSSEKSDIRVFCDKAFSRLKGSDRNLPQVVRLQ
NLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFD
GKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEENDMKNVMIGSATRLESQFR
LTYIMIMHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAIDCIKGEPA
IEEYYELYSEAEKYNAEISEAVMRSPASQQYLVTGRVVVVKSQSVQDHLLGVIVKAPSSN
SKQYIVLVITPDLPQTLQAPINGGDQHKSSGDFQILVPKAKRGFEDDYFSSVSSRRGSGA
INIKLPHRGNTAGVNYEVRGIEGTEFLCICNCKLKIDQVRLLEDVSSVAYSKTVQLLLEK
KSDGRYPPALDPVKDLKLNDLNVVETYYKWCSLLQKMTQNKCHGCVKLEEHIKLAKEVKK
HKEEVKALKFEMSDEALQQMPDFQGRIDVLKEIGCIDSFLVVQIKGRVACEMNSGEELIC
TECLFENQLDDLEPEEAVALMSAFVFQQRNASEPSLTPKLSEATQRLYNTAIRLGELQAQ
FKLQIDPQEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREF
KNAAAIMGNSALHKKMEIASNAIKRDIVFAASLYITGV
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatcgacgtcgccaacgagcttccgtttcgggtcgggttcaccgggcacagc
ggtcatctcagaatcgagcctcttcctcccgttcaaagctccgacccgctccattcgctc
cccgactttatactccctcccgcgtttcccacagagacgccagaatcaataaaagaatat
attgaagagaaatatctcctgccaagattagacgcagatgacttttctcctgacaaagat
ggaaggcaatgggagtttgactggtttgataaagcacaagttaacttagagccatcggta
cctcgatcagtcgtggtcccgaagtgggaattaccttttagacgttcaactacgagaact
atgtcaaaaatgtgggatcctagctcaatgcaggtggatgtagcagaacttatggaagga
tccgaggattctggtgttttgccacgcatttctggacctgcaaaggattttgttagggga
agcattaatagccgtccttttcggcctggtggcttagataattctcagacgattggaagg
attcttcctgaaggggcaactagtggggattgggtgcgggaggtgcttactggtggtgcg
tctcagtcccttccaccaagttttagacaaggaatggattttgggaacctcaaggcacat
tcacactcatggaacgttcatggagatcaaggagaagcgaaaagtacatctgatgctaag
actcagttatctgtgcaatttgatgatttattcaagagagcttgggaagatgatttcgac
gaatctgctaaaagtggtgtagtggtgccaggagatgaacctgctgtagaggattttaat
aagacggattcgttcccaccagaaattgaaaggatttcgccaaatgaaagtgagagttgt
cttgtggtggagacatcagttttggatgagattttgtcagttgggtcgggaaatttagct
tcaggattgattgaaggtagtagcaccagtggacagcaacaaaaagaggcctgggcagtt
agtggaggaagtgaaagtattgcagagcgcttccatgatctcattcctgacaaggcacta
gattttcctttcgagctggatgcttttcagaaagaggccatctattatcttgaaaagggg
gactctgtttttgtggctgctcatacatcagctgggaagacagctgttgccgaatatgca
tttgccctagcttcaaaacactgtaccagagcagtatatactgctcctataaaaacaatc
agcaatcagaagtacagggatttttgtggaaagtttgatgttggccttttaactggggac
gttagcttgaggcctgaggcttcttgtctcattatgacgactgaaattttaagatcaatg
ctttacaagggtgctgatatcatacgtgacattgaatgggttatctttgatgaagtgcat
tacgtcaatgatgttgaaagaggtgtggtttgggaagaagttattattatgcttccaagg
catatcaacatcgttctcctttcagccacggtacctaatactatagaatttgctgattgg
attggtcgcactaagcagaaacaaatacgtgtgaccgggacaaccagaagaccagttcca
ttagaacactgtatattttactctggggaattttataaagtatgtgagaacgaaaagttt
ctttcactgggatttaaagctgccaaagatgcatacaagaagaaaagcatgagtactggt
ggtggttctggaaaatcttattctggatcttcagtatcccatgatgttgctcgaactcaa
aaacgggaaagtactttcagaagcaaacagaacaagcaatctggaccccaaaatctaggg
tcatcttctggatctggatgggggcaccaaaacagcggaggtagccagaacaattgggga
tcaaggagatcagaagcttctttgtggttgttgcttataaataagctcacaaagttggca
ctattacctgtggttatattctgtttttcaaaaaatcgttgtgataaatcagccgatcat
atgaatggggttgaccttacaagtagctcggaaaaaagtgacattcgtgttttttgtgac
aaagcattttcacggctgaaaggatctgacaggaacttacctcaggttgtcagactccaa
aacctgctacgtcgaggcattggtgtgcatcatgcaggactacttccaattgttaaggag
gtggtcgagatgcttttctgccgtggcgtcatcaaggttttgttttcaacagagacattt
gcaatgggtgttaatgcgccggctaggacggttgtgtttgatacattaaggaagtttgat
ggaaaggaatttagacagttactcccaggagaatatactcagatggctggccgtgctgga
aggaggggtctggataagattggtactgtggttgtgatgtgtcgtgatgaaattcccgag
gagaatgatatgaaaaatgtcatgattggtagtgcaacgaggcttgaatctcaatttcga
ctgacttacatcatgattatgcatctccttcgtgttgaagagttaaaggtcgaggacatg
ctaaaaagaagttttgctgagtttcatgctcagaaaaagcttccagagcagcaacaactt
ttaatgcgaaaacttgctcagccaacaaaagccatcgactgtataaaaggtgaaccggca
attgaggaatactatgaattgtactctgaggctgaaaaatataatgctgagatatcagag
gcagtaatgaggtccccagcttctcaacaatatcttgttactggaagagttgtggtggtg
aagtcacaatctgtacaagatcacttacttggagtgatagtaaaagcaccttcttcaaac
agcaaacagtacatagttctagttatcacacctgatctaccccagacacttcaagctccc
atcaatggcggtgatcaacataagagcagtggtgattttcagatattggtacccaaggca
aagcgtggatttgaagatgactacttttcgtctgtctcttcgcggagaggatcaggtgcg
attaacataaaattaccacaccgtggcaacactgctggggttaattatgaggttcgagga
attgagggtacagaatttttatgtatatgcaattgcaaattaaagattgatcaagttcgg
cttctggaagatgtaagtagtgttgcttactccaagaccgtacaacttctcttggagaag
aaatctgacggaagatatcctcctgcactagatccagtgaaagatttaaagctaaatgac
ctgaatgttgtggaaacgtattacaagtggtgcagcctattgcaaaagatgacacaaaat
aagtgtcacgggtgtgttaagttggaggagcacattaagttggcaaaagaagtaaagaag
cataaagaagaagttaaagctctaaagtttgaaatgtcagatgaagcacttcagcagatg
ccagattttcaaggccggattgatgttctgaaggaaattggatgtatagattcttttctc
gttgttcagataaaaggccgtgttgcttgtgagatgaattctggggaggagctgatatgc
actgaatgcttgtttgagaaccagctagatgatctagaaccagaagaagcagtggcatta
atgtcagcctttgtgtttcagcagaggaacgcttcggaaccttctctaactcctaagctc
tcagaggccacacaaagattgtacaacacagctataagattgggggagcttcaggcacag
tttaagctgcagatagatccccaggagtatgctcgagaaaatctcaagtttggccttgtt
gaagtagtgtatgaatgggcaaagggaaccccatttgcagatatatgtgaacttacggat
gttcccgaaggtctgatagtgaggaccatagttaggttggatgagacatgtcgtgaattc
aaaaatgcagctgcaattatgggtaattctgcacttcacaaaaagatggaaattgcttcc
aacgcaataaaacgtgatattgttttcgctgctagcttgtacattacaggagtgtaa
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