Daucus carota (carrot): 108218394
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Entry
108218394 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108218394
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108218394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108218394
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108218394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
ANAPC4_WD40
Clathrin
VPS8_N
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_VPS8_2
Beta-prop_WDR5
Beta-prop_WDR3_1st
zf_RING_Vps8
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_EML
Beta-prop_THOC3
WD40_WDHD1_1st
zf-RING_Vps41
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WD40
WD40_Gbeta
WD40_Prp19
Beta-prop_Aladin
Beta-prop_LRRK2
Beta-prop_WDR36-Utp21_2nd
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
108218394
NCBI-ProteinID:
XP_017246802
LinkDB
All DBs
Position
4:41533127..41548141
Genome browser
AA seq
1894 aa
AA seq
DB search
MELDLDSLLNSNLTDDDSDSETATSQRRTVDEIILNDSSSSSSSPPSSPKRIDVSNNSKT
LTLVNRSPELPYADARNRNALPALFGSSSSSVRSSVKPGAALAAAFAASRNAQSPHAAAI
KLRRASASSVEVNEVVSQPLAVETELSSSFDVDDAVRDVNYGMSNLRDSFTERNEGYEVT
SVSYVNESSRDNFELVLDMHIAPTPSLTTEEEKEECNSKNSVLRDDSAFDVNTENFIGEQ
NVDNNALEYENGRVVEEDFISILEKHDEAEGIPSSEKEVEDNVNQYENTFSSDGSEPYEN
IDMQLENRGSETTREETHIYMKPLDMAEELEKKYALTDSQGKKDAASQPMRLEGVHHGST
VLGYFDINANNTVTRTISSETFRRDHGSAQVLAVHLNYIAIGMSKGVIICFPSKKTPMVA
DSSDAKIVMLGIQGERSHASVMAMCFNRQGDLLFAGYADGHYTVWDVQKATSLKIIREHK
APVVHIFYLGLDSQTSRQFNVVSGDSKGVIKVIHFKYVPWMNRISINKQVTLLDETTSTV
VCACPLLFDEYSGGALTSAQGSATVNSSSIGSMMGGVVGGDWKLFEGSSVVEEGVVIFVS
HQSALVAKVNPGVEVYAQLPRPEGVREGCMPYAAWKYMRQPFTSINDVPDKSSERVGLLA
LAWDRKVQVARLVKSELKIFRKMTLKSSAVGVTWLDDQLLVVLTSDGQLCLFETEEGILI
HQTSFAVDGSRADDLIAYHSQFSTTSGSPEKAYHNCVAISGASIYVLGPKQLTVSCLLPW
KERIEVLRKAGDWIGALNMAISLYNGDTHGVIDFPRTSDEVNNTVMPYLVELLLSYVDEV
FSYISVAFCNQIGKLDQLEDSSTSGSVHSEIEEQFTRVGGVAVEFCVHIKRTDVLFDEIY
SRFVSVKHKDTFLELLEPYILNDKLGSLPPEIMQALVEHYSMKGWLQRIEQCVLHMDISS
LDFNQVVRLCREHRLYGALIYLFNKGLDDFRTPLEELLVVLQNSQKDIAASIGYRMLVYL
KYCFLGRAFPPGPGILSPTRLQSVRRELVQFLLEDSKIPSSPGPASSCLTPHPNLFHLLF
LDTEATLDVLKWAFVEDEVQKSDHPSPVSALSNMDSTKDQFFQNLLQKTIDVLAVIIDQR
CSPNNRSVSNYDVEFKEIWPSKKDISHVIDFVAYYISCQKATVSKNILGEILVYLTSTAD
VDIHPMVSRQNLQAFRKREKQVLEILEVVNETDWDASYLLSLCEEAQFYQVCGFIHAIGH
QNLAALESYMKDAEEPIHAFSFISSTLLQLHGNLSDAFLSEIMSRIPDLVKLSREGTFFL
VVEHFGSDHDRALREMESCPKSLFLYLKTIMEAHTKGSLNFLCFKKGDNVNIRSGRRNRC
HPNRIETYMERISEFPKLMRDNPVHVTDNIVEQYLELLCQYEPSSVLNFLETFENYRVEH
CLRLCQKYGVVDATAFLLERVGDVGTALSLTLSVLDDKFTILGTTVQDLLSKSSMKSFNT
VLQKKEVNDILEIVRACIGLCQRNSPRMDFDESESLWFRLLDSFCEPLIDSYSTKVNSEG
KFSTDTLANSLDSEENKSGYGIRWKLSRFEKSAYILRKLFSLFIKEIVEGMIGYVRLPTI
MMKLLSDNGSQEFGDFKVTILGMLGTYDFERRILDTAKSLIDDDNYYTMSQLKKGASHGY
GPKSLLCCICNCPLSRNSTTSRIQVFSCGHTTHLQCELQENEALQGGFSAGCPICIPKKN
TQGSKSKSAYAEPGLVRRPLSRNQPAEGNSLHLNDSEAAESSYGYHPISRYEILTSLQKD
NSLNHVDNTPQLRLAPPALYHEKVKNNFFGEASSSGKVKKGNDLLRGESVGNSAKLRKTS
KSKQLRDLKLKGSSIRFPLKANIFGKEMISRRLH
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atggagctagacctagattctctcctcaattcaaatctcaccgacgacgacagcgacagc
gaaaccgccacttctcagcgtcgcacagttgacgagatcattctcaacgactcctcctcc
tcctcgtcatctcctccctcgtctccgaagcgaatcgatgtttcgaataattcgaaaacc
ctaacacttgtaaacagatcacctgaattgccttatgctgatgcacggaatcgaaatgct
ttgcctgctttatttggcagcagtagcagtagtgtgagatccagtgttaagcctggtgct
gctttggctgctgcttttgctgcgtctcggaatgctcagtcgcctcacgctgctgctatt
aagctgcggagagctagtgcttcttctgttgaggttaatgaggtagtttctcaaccgctt
gctgttgaaactgaactttctagtagttttgatgttgatgatgcggttagagatgttaat
tatggaatgagtaatttgagggatagttttacggaacggaatgaaggatatgaagttaca
agtgtatcttatgtgaatgaatcgagccgtgataattttgaactagttttggatatgcac
attgctcctactcctagtttaactactgaagaagagaaagaagaatgtaattcgaaaaat
tccgtattacgtgatgactctgcttttgatgttaatacagaaaattttattggtgaacaa
aatgtagataataatgcattggaatacgagaatgggagagtggttgaggaggatttcata
tcgatattagagaaacatgatgaagcggagggaataccttcgtctgaaaaagaagtagaa
gataatgtgaatcaatatgaaaacacgttctcaagtgatggttcggaaccttacgaaaac
attgatatgcaattggaaaatagggggagtgaaacaactagggaggaaactcacatttac
atgaagcctcttgatatggcagaagaacttgagaagaaatatgcacttacagattcacag
ggaaagaaagacgcagcctcccaacctatgaggttagagggtgtgcaccatgggtctact
gtgttgggatactttgacattaatgccaacaacactgttacacgcacaatttcttccgaa
acatttaggcgagatcatggatctgcacaagttttggctgttcatctcaactatattgct
attggaatgtcaaaaggggtgattatctgctttccaagtaaaaaaacccctatggttgcc
gatagtagcgatgcaaagatcgtgatgcttggaatacaaggggaaagatctcatgcctca
gtcatggccatgtgtttcaatcggcaaggggacttgctttttgcaggatacgctgatggg
cattatactgtttgggatgtccagaaagctacttctcttaaaatcattagggaacacaag
gcaccagtggtgcacatattttatcttggactggattctcaaaccagtcggcagtttaat
gtggttagtggtgacagtaaaggggtgattaaggtgatacactttaaatatgttccatgg
atgaataggatatccataaataaacaagtgactcttcttgatgaaacaacaagcacagtt
gtttgtgcttgtcctttgctctttgacgaatattctggaggtgccttgacttctgcccag
gggagtgctacagtaaatagcagtagtattggaagcatgatgggaggtgtagtcgggggt
gactggaaactgtttgagggctcttctgtggttgaagaaggtgtggtcatatttgtcagt
catcagtcagcattggtggcaaaagtcaatccaggtgttgaagtctatgcacaacttccg
agacctgaaggggttcgggaggggtgtatgccttatgccgcctggaaatacatgagacaa
ccattcacttctattaacgatgtgcctgacaaatcatcagagagagttgggctgcttgcg
cttgcatgggatcggaaagttcaggttgcaaggttggtaaagtcggagctaaaaatattt
aggaagatgacacttaaaagctcagctgtaggggtgacatggttggatgaccagttgtta
gtggttcttacatcagatggacaactatgtttgtttgaaactgaagaagggattctgatt
caccagacaagttttgctgtggatggatctcgagcagatgatctcatagcctaccattcc
cagttcagtactacttctggaagcccagaaaaagcatatcataattgtgtagcaatatct
ggtgcttctatttatgtacttgggccaaagcagcttactgtttcttgccttcttccctgg
aaggagaggattgaagttttacgaaaagcaggagactggataggtgccttaaacatggca
atttcactttataatggggacacccatggagtcattgattttcctaggacatcagatgaa
gtgaacaatactgttatgccctacctagtagagttacttttatcttatgttgatgaagta
ttttcatacatatcagtagcattctgcaaccagattggcaagctggatcagttagaggac
tccagcactagtggttctgtacattccgagatagaagagcagtttactcgtgtcggtggt
gttgctgtagagttttgtgttcatatcaagagaactgatgttctttttgatgaaatttat
tctagatttgtttctgttaaacataaagatacatttttggagcttttggaaccatatata
ttgaatgacaagcttggatcccttccacctgagattatgcaagcactggtagagcattat
agcatgaaaggttggctgcagcgaatcgaacaatgtgtgctgcacatggacatatcttcc
ttggatttcaatcaggttgtccgcttgtgccgggagcacaggttgtatggtgcactgata
tatttgtttaacaaaggtctggatgatttcagaacaccattagaggagcttttagttgtt
ttacaaaatagccaaaaagacattgctgcttccattgggtacaggatgcttgtttacctg
aagtactgttttttaggccgtgcatttcctccaggaccaggaattctttctccaacacgc
ttacagtctgttcgaagagaacttgtacaatttttactggaggattccaagattccaagt
tcacctggacctgcaagctcatgcttaacgccgcacccaaacctatttcatttgttattt
ttggacacggaagctactttagatgttctgaagtgggcatttgtagaagatgaagttcaa
aaatcagaccatccttcacctgtatcagccctctcaaatatggactccacaaaagatcaa
ttcttccagaatttgttgcagaagacgattgatgttcttgctgtaatcattgatcaaaga
tgctccccaaataacagatctgtcagtaactatgatgtcgaatttaaagaaatttggcct
tcaaagaaagacattagtcatgtcattgactttgttgcctactatatctcgtgccaaaag
gctactgtctcgaagaatatattgggtgaaatattagtgtacctgacatcaacagcggat
gttgatattcatccaatggtttcaagacagaatctacaagcttttagaaaaagagaaaag
caagttcttgaaattctggaagtagtgaacgagacagattgggatgcgtcatacttgtta
agtttgtgcgaggaagcacagttttaccaggtttgtggtttcattcatgcaattggacat
cagaatcttgctgctttggagagctatatgaaagatgctgaagaaccaatccatgccttt
tcctttataagttctacactgcttcaacttcatggaaatctttccgatgcttttctatca
gaaattatgtcacgaattccagatttggtcaaattaagcagagagggcacattctttttg
gtggttgagcatttcggcagcgatcatgatcgtgctttacgtgagatggaatcgtgtcct
aaaagcctcttcctctatctaaagactataatggaagctcacacgaaggggtctcttaac
tttttgtgtttcaagaaaggtgataatgtaaatattcgcagtggaagaaggaatagatgt
catcctaatagaattgagacgtacatggaaaggatttctgaatttccaaagttgatgcgt
gataatccagttcatgtaacagataatatagttgaacagtatcttgagctattatgtcaa
tatgaacccagttcggtactcaatttcctggagacttttgagaactatagggtcgaacac
tgtttacgtttgtgtcagaagtatggggtggtagatgctactgcttttttattagaacgg
gttggtgatgttggcactgctctctcacttactctttcggtcctcgatgacaaatttacc
attcttggtaccactgttcaagatttactttctaaatctagtatgaagagtttcaacact
gttttgcagaagaaagaggtaaatgacatacttgagatagtgcgtgcctgtattggacta
tgccagcggaacagccctcgaatggattttgacgagtctgagtccctctggttccgatta
cttgattcgttttgtgaaccattgattgattcctacagcaccaaagtgaattctgaggga
aaatttagcacggatactttagctaactcattggacagcgaagaaaataaatcagggtac
ggaatcaggtggaagctatcaagatttgaaaaaagtgcttacattttaaggaaattgttt
tctttgttcattaaagagattgttgagggaatgattggttacgtccgccttccgaccatt
atgatgaaactcctatctgataatggtagccaggaatttggtgattttaaagtgactatc
ttgggaatgcttgggacatatgattttgaaagaaggattttggacactgctaaatcattg
attgacgatgacaactactataccatgagccaactgaagaagggggcttctcatgggtat
gggcctaagagtctgttatgttgcatatgtaattgcccactttcgagaaactccacaacc
tctagaattcaagtattcagttgtggacatacaacccatctgcagtgtgaacttcaagaa
aatgaggcattacagggaggattttcggcaggatgccccatatgtatacctaagaagaac
actcagggttctaaaagtaagtctgcctatgcagagcctggattagtaagaagacctttg
tcaagaaaccagccagcagaagggaacagcctccatctaaatgatagtgaagcagctgag
agttcctatggttatcatccaatttcaaggtatgaaatcttaactagtcttcagaaagac
aatagtttgaatcatgtagataatacacctcagttaagacttgcgccaccagccctttat
catgaaaaggtgaagaacaatttttttggtgaagcaagtagcagtggaaaggtaaagaaa
ggaaatgatcttttaagaggagaaagtgttggtaattctgcaaaacttcgaaaaacaagt
aaaagcaagcaacttagagatttaaagttgaaaggatcttccattcgatttccattgaaa
gcaaatatttttggcaaggagatgattagccggaggctacactaa
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integrated database retrieval system
