Daucus carota (carrot): 108218447
Help
Entry
108218447 CDS
T05350
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108218447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108218447
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108218447
mRNA degradation factors
5'-3' decay
Decapping complex
108218447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_TEP1_C
EIF3I
Beta-prop_EML_2
PGDH_C
Motif
Other DBs
NCBI-GeneID:
108218447
NCBI-ProteinID:
XP_017246868
UniProt:
A0A165Y7V4
LinkDB
All DBs
Position
4:42924480..42934670
Genome browser
AA seq
1404 aa
AA seq
DB search
MASPGNPNQQPNIPPPQLDMHKFFNPNLQNPNLTSPPFPLPNSSYPPPSSASYPPPAGPY
PYPPPQTSPFHHPQQQQFHIPPANLHHQRSIPFPTPPLQPPPNNNPNHGARLMALLSGPQ
SEIQQQSYMPVMAPLQPTSSGGSDISMAQNLPGLQSGQMVSNVSNTAAAMVQSSPMRMQS
SKLPKGRHLIGDHAVYDIDVRLMGEVQPQLEVTPITKYGSDPGLVVGRQIAVNKSYICYG
LKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYIWKITEGPGEE
EKSQITGKIVMAIQIVGEGDSVHPRVCWHCHKQEVLVVGIGRTVLRIDTTKVGKGEVLSA
EEPLKCPVDKLIDGVQFVGNHDGEVTDLSMCQWMTTRLVSASVDGTIKVWEDRKSHPIAV
LRPHDGLPVNSATFLTSPHRPDHIILITGGPLNREVKIWTSTSEEGWLLPSDADSWQCTQ
TLELRSSAAPRVEDVFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPHPAATRMDYIAE
FTVTMPILSFTGTSDLLPHGDQIVQVYCVQTQAIQQYALDLSQCLPPPLENMLDRSDSSV
SRDVTSTVGLTNFEPSGSKPTETFFASPQARQAVHEISSETVAPAIRNPLTSPSTQVTTS
QEAAMLGAESGPLPLPGVNGDSDIASVSSPPIPLSPRLSRKLSGFRSPSSNFEPGSQLND
FSVDQNISEYSVDRQMDTVHRNFSDSTVDDPKREGKKVPQEDNSAVLNHPIKFKHPTHLV
TPSEILRATSSSETNYTEPKGEGEPNIQDAVVNNDAHNVEVEVKVVGETHISQNEELASP
EELHGFASDRREKSFYSQAADLGIEMARESHALPLEAYIMEESRQVDGARETDAVDQPSS
NQEEVQDSLKDISGKFGDSSVPASAPSQTTKGKKQKTKNAQGSISNSPPSSASNSTDIYH
EAAVSSSLPSVDAAFSQLQNMQESINQLLNMQKELQKQISVMVAVPVNKEGKRVEASLGK
NMEKSVKANSDALWARFQEENAKQEKLLRERTQQILNLVTNSLTKELPVVLEKMVKKEIA
AVGPAVSRTLTTAIEKTVSTAITEAFQRGVGDKAVNQLEKSVNSRLEATVARHIQAQFQT
SGKQILQEALKSSLETSVVPSFEVSCKAMFEQVDTTFQRGMAEHTSAAQHQFESTHSPLA
LALREIINSASSVTQTLSTELVDGQRKLLALAVAGASSNSANPLIRQQSNGAIGGLRGEI
EGSLDPTRELLRLVSEQKYEDAFTIALQRSDVSIVSWLCSQVDLSNILSMKTLPLSQGVL
LSLLQQLACDISKDTSRKLVWMKDVAMVINPGDVMIAQHVKPIFEQVYQILSHQMNLPTT
PPNELSSMRLVMHIINSLLVTCGK
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcttctccaggaaaccctaaccaacagccaaacatccctccacctcaattagatatg
cacaaattctttaaccctaatttacaaaaccctaatttaacttctccgccttttccactc
ccaaactcctcttatcctccaccttcttcagcctcttatcctccacccgcggggccctat
ccttatccgccgccccaaacgtcgccgtttcatcaccctcagcaacagcagttccacatc
cctcctgctaacttgcaccaccagagatccataccgtttccgacgccgccgcttcagcct
ccgcctaataacaacccgaatcacggcgctaggctcatggcgttactcagcggaccgcaa
tcggagattcagcagcagagttacatgcctgtgatggcgccgcttcagcctacgtcgtcg
ggtggttcggatatttctatggcgcagaatttgcctggtttacagtcggggcagatggtg
agtaatgttagtaacacggctgctgcgatggtgcagtcaagtccgatgagaatgcagagt
agtaagttgcccaaagggaggcatttgattggtgatcacgctgtttatgatattgatgtt
aggttgatgggggaggtgcagcctcagctcgaggttactcccattaccaagtatggttcg
gatcctggacttgttgtgggtaggcagattgctgttaataagagttatatttgctacggg
ttgaaattgggggctattcgtgtgcttaatataaatactgcattgagatcgttgcttaaa
ggacttgcgcagagggtcacagacatggctttctttgccgaagatgttcacctgctggct
agtgcaagtgtagatggacgtgtatatatatggaagataacagaagggccaggtgaggaa
gagaaatcacaaattacaggaaagatagttatggctattcagattgttggagaaggagat
tctgttcatccccgggtttgttggcactgccacaaacaggaagttcttgtagttggtatt
gggagaactgttctgcgaattgataccacaaaggttggaaaaggtgaagttctttcagca
gaagaacctttaaaatgccctgttgacaaattgatagacggggtccaatttgttggtaat
catgatggagaagtgactgatctgtcaatgtgccagtggatgactacacgattggtttca
gcttctgtggatggcacgataaaagtttgggaagaccgaaagtcacaccccatcgctgta
ctgagaccgcatgatggtctgcctgttaattcagctacatttttgacttcccctcatcgc
ccagatcacattatactcattactgggggccctttgaatcgcgaagtgaaaatatggacc
tctacaagtgaagaaggatggctgcttcctagtgatgctgattcatggcagtgcacccag
actttggagttgcggagctctgctgcacccagggtcgaagatgtgttttttaatcaagta
gtggctttgtcgcaagcaggtcttctgttattggcaaatgccaagaaaaatgctatctat
gcagtacacctggaatatggtcctcatccagcagcaacccgcatggattatattgcagag
tttactgtgacaatgccaattttgagctttactgggacgagtgatctgttgcctcatggt
gaccaaattgtgcaggtttattgtgtccagacacaagccatccaacaatatgcgctggac
ctgtctcagtgcttgccacccccactagagaatatgctggataggtcagattctagtgtt
tcacgtgatgtaactagtactgtgggattgacgaattttgagcctagtggaagtaagcct
acagaaactttttttgctagtccacaagccagacaggcggtacatgaaattagctccgag
actgtggcacctgcaataagaaatcccttgacctccccttctacacaggtaaccacttca
caggaagctgctatgttaggtgcagagtctggacctctccctttgccgggagtgaatggt
gatagtgatattgcctctgtttcatcaccaccaattcctcttagtcctaggttgtcgcgt
aagctctctgggttcagaagtccatcaagcaactttgagccaggttctcagctcaatgac
ttcagcgtagatcagaatattagtgaatactccgttgacagacaaatggatactgttcat
agaaacttttctgattccaccgtggatgatcccaaaagggaggggaagaaagttccacaa
gaggataattcggctgttctcaatcatcctatcaagttcaagcaccctactcatctagta
accccgtctgagatattaagggcaacctcatcttcagaaacaaattatacagagcccaag
ggtgagggagaaccaaatattcaggatgccgttgtcaataatgatgcacataatgtcgaa
gttgaagttaaggttgttggtgagacacatattagtcaaaatgaagaacttgcctctcca
gaagagctccatggatttgcctcagataggagggagaaatcattttattctcaagctgct
gatcttggtattgagatggcaagagagtcacacgctctgccacttgaggcctatattatg
gaagaatctagacaagttgatggggctagagaaacggatgcagttgatcaaccttcaagc
aaccaggaagaagttcaagactctttaaaagatatctctggaaagtttggcgattcatct
gtgcctgcatctgctccttcacagacaacaaaaggaaaaaagcagaaaacaaaaaatgct
caaggatcgatctcgaattctccgccttcaagtgcttctaattcaacagatatatatcat
gaagcagctgtcagctcgagtttgccttctgtagacgctgcattttctcaacttcagaac
atgcaggagtcgataaatcagcttctaaatatgcaaaaagaactacaaaagcaaatatca
gtgatggttgctgtaccagttaacaaagaaggcaagagagtagaagcttccctcgggaag
aatatggagaaatctgtaaaggctaattcagatgctctgtgggcccgctttcaggaagaa
aatgcaaaacaggagaagttattgcgagaacggacacagcaaatattgaatttggtaaca
aactctttgacgaaggaattaccagtggtgttggagaaaatggtgaagaaggaaatagct
gcagttgggccagctgtatcccgcacgttgactaccgctatagagaaaactgtatcgacg
gccatcaccgaggctttccagagaggagtaggcgacaaagcagtgaaccaactggagaag
tctgtcaactctagacttgaagctactgttgctagacacatccaagcacaatttcagact
tctggcaaacaaattcttcaggaagcattgaaatctagcttagaaacttctgtggtccct
tcatttgaggtgtcgtgcaaggccatgtttgaacaagttgatactacatttcaaaggggg
atggctgagcatacaagtgcagctcaacaccagtttgaatccacacattcacccttggct
cttgctttaagggagattatcaactcagcatcgtctgtgacccaaactcttagtactgaa
ctggttgacggtcagagaaagttgcttgctcttgccgttgcaggagctagttccaattct
gcaaatccgttgattagacagcagagtaatggagctattggcggtcttcggggcgagatt
gaagggtcactggatcctacaagagaactattgagattggtttctgaacagaagtatgaa
gatgctttcactatcgctctgcaaagaagtgatgtttccattgtatcatggctatgctct
caggttgatttaagtaacattttgtcaatgaagacccttcctttgagccaaggagtatta
ctctcacttctgcagcagttggcttgtgatatcagcaaggatacatctcgaaaacttgtt
tggatgaaagatgtagcaatggtgataaatccaggtgatgtaatgattgcacaacatgta
aagccaatatttgagcaagtttatcagatccttagccatcaaatgaatcttcccaccaca
cctcccaacgagctttcaagtatgcggctcgtgatgcatatcatcaattcattgcttgtg
acatgtggtaaatga
DBGET
integrated database retrieval system
