Daucus carota (carrot): 108218524
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Entry
108218524 CDS
T05350
Name
(RefSeq) cell division control protein 48 homolog E
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108218524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108218524
03009 Ribosome biogenesis [BR:
dcr03009
]
108218524
04131 Membrane trafficking [BR:
dcr04131
]
108218524
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108218524
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108218524
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108218524
Membrane trafficking [BR:
dcr04131
]
SNARE
SNARE associated proteins
Others
108218524
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108218524
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108218524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Vps4_C
AAA_7
Viral_helicase1
NB-ARC
AAA_24
TsaE
NACHT
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
108218524
NCBI-ProteinID:
XP_017246991
UniProt:
A0A165WT57
LinkDB
All DBs
Position
4:32214044..32218844
Genome browser
AA seq
807 aa
AA seq
DB search
MSNLPESSDSKGAKRDFSTAILERKKAANRLVVDEAVNDDNSVVSLHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCV
VAPDTEIFCEGEPVRREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRHSI
FKSCLRKSPVSKDVDLMALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSEN
PEAMEEDDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFS
ETSGTAAAGSDPFAAPAGVADEDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatctccccgaatcatccgactcgaagggagcgaagagggacttcagtacagcg
attcttgagcgcaagaaggcggcgaatcgtttggtggttgatgaggctgttaatgatgat
aactcggtggtttcacttcaccccgagactatggagaagcttcagctctttcggggcgat
actattctcataaagggtaagaagagaaaagatacaatctgcattgccctagctgatgat
acttgtgatgaaccaaagattcggatgaacaaagttgtcagatcaaatctcagggttaga
cttggagatgtcgtttctgtgcaccagtgtgctgatgtcaagtatgggaagcgtgttcac
attcttcctgtggatgatactattgaaggggttactggaaacctttttgatgcctatctc
aagccctatttcctggaagcctatcgccctgttaggaagggtgatctatttcttgtaagg
ggaggcatgcgaagtgtggagttcaaggttattgagacagatcctgctgagtactgtgtt
gttgcccctgacacagaaatattctgcgagggagaacctgtgagaagggaggacgaagat
aggttggatgagattggatatgatgatgttggtggcgtccgtaagcaaatggctcagatt
agggagctggtggagctccctttaagacacccacaactcttcaaatctattggagttaaa
ccaccaaaaggaattttgctttatggacctcctggatctgggaaaactttgatagcccga
gctgttgcaaatgaaactggtgctttcttcttttgtattaatgggccagaaattatgtca
aagttggctggggagagtgagagcaatcttaggaaagcatttgaagaagctgagaagaat
gcaccatccattatcttcattgatgagattgattcaattgctcccaagcgagagaagacc
catggagaagttgagaggaggatagtttcccaacttttgacacttatggatggacttaaa
tctcgtgcccatgtcattgttatgggtgctacaaatcgtcccaacagtattgaccctgct
ctgagaaggtttgggagatttgacagagaaatagatattggtgtacctgatgaagtagga
cggctagaggttctccgcatacatacaaagaacatgaagctcgctgaagatgttgatttg
gaaagaatctcaaaagatactcatggttatgttggtgctgatttagctgctctgtgtact
gaggctgcacttcaatgcatcagggagaagatggatgttatcgatttagaagatgacaca
atagatgcggagatactgaactcgatggctgttactaatgagcacttccacactgctctt
ggaactagcaatccctctgctcttcgtgaaacagttgtcgaagtgcctaatgtcagttgg
gaagatattggaggcttggagaatgttaagagagaacttcaagagactgtccaatatcct
gtggagcatccggagaaatttgagaagtttggcatgtcgccttcaaagggagtccttttc
tacggaccacctggatgtggaaaaactctactggccaaggcaattgctaatgaatgccaa
gctaattttatcagtataaaaggacctgagttgcttaccatgtggtttggagagagtgag
gcgaatgtacgagaaatatttgacaaggctcgtggatctgctccttgtgtcttgttcttt
gatgaactggattcaattgccactcagaggggaagcagtgttggagatgctggtggagcc
gctgatagggttttgaatcaactcttaaccgaaatggatggcatgtcagctaagaagact
gttttcattattggggctaccaataggcctgatattattgatcctgcactattgagacct
gggcgtcttgaccagctaatttacattcccctccctgatgagtcgtcccgccattcaata
ttcaagtcatgccttaggaagtcacctgtttctaaagatgtcgatttgatggcacttgcc
aagtacactcaaggatttagtggtgctgatataactgaaatatgccaaagggcttgcaag
tatgccatcagggaaaatatcgagaaagacattgagaaggagaagaggagaagcgagaat
cccgaggcgatggaggaggatgatgtcgaagatgaagtggctgagatcaaggcggctcac
tttgaagaatcaatgaagtatgctcgacggagtgtcagtgatgctgatattcggaagtac
caggcattcgcccagacattgcagcagtctagagggttcggctctgagttccgattttca
gaaactagtggcactgcggcagctggctctgacccatttgccgctcctgccggcgtggct
gatgaagatgacctgtatagttag
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