Daucus carota (carrot): 108218640
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Entry
108218640 CDS
T05350
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108218640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108218640
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108218640
mRNA cycle factors
Common to processing body (P body) and stress granule
108218640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Dimeth_Pyl
Motif
Other DBs
NCBI-GeneID:
108218640
NCBI-ProteinID:
XP_017247163
UniProt:
A0A165YDE1
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All DBs
Position
4:complement(44024651..44032884)
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AA seq
960 aa
AA seq
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MTIPMDNTSDNLPRERIQRLYNQNAELESRRRKAAQARIPSDPNAWQQMRENYETIILED
NAFSEQHEVEYALWQLHYRRIEELRAHYSAALSAVSQSGKGSMRGGPERVTKIRSQLKTF
LSQATGFYHDLMVKIRAKYGLPLGHFAEDLETQISLSKDGNRLVEIKKGLVSCNRCLIYL
GDLARYKGLYGEDDSKARDFAASYSYYMQAAAIWPSSGNPHHQLAILASYSGDELVAVYR
YFRSLAVDNPFSTARENLIIAFEKNRQIYSQLLGDVKPSSVKTRQVRVNGRGRGKGDNKP
TTKDVKVEATLFKEKSRSMAEILKAFSTRFVRLNGILFTRTSLETFEEVFSLTKSDFLEL
VSSGAVEGLNFGSDTSECRLLIIRLIVILIFTVHNVNRETENQSYAVILQRSVVLKNAFT
AIFEFMGHILERCIQLTDPSASYMLPGIMVFVEWLACRQDIAVGSELDERQSSARSFFWN
HCVTFFNKLLSSSFMFVNQDEDDTCFYNMSSYDENETGNRLALPEDFELRGFLPLQAAQL
VLDFSRKHSFESEGGKKEKKARIERIIAAGKSLANVVKVGQQVIYYDTRLKSFVFGVEPQ
IAENPVLDFKGEANLEGSKTTALQPKAQLHLDVDDEDEVIVFKPVVNKNNTDVIDSNLTV
SEVFLSGIDVSSVSLGNTSAYVSASHDDTILQNSFNTSSRPPISLDFTAQYLQPSQPSDL
NWATERGSAVNGFSNLSFVESDFSSKSKLQDFSGLLRPAPSTAPFPQPPSLDAVNRYPGS
STETLIPNQSDSVMSSGVNTDTLSRKPSLAMAVGAKKNPVSRPIRHSGPPPGFNSVPSKP
VDELFSGITLKEAPAMDDYSWLDGYRLPASAQIGGFSNSINPVQAGLPPTKSENSIGLVS
FPFPGKQVSTSRAQMDKQNIWQDYQFPGTLNQNHQKANIQTIPIGQQYQGQSLWEGRFFV
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgactataccaatggacaacacttctgataatcttccaagagagcgtattcagcgactt
tacaatcagaatgcagaattggagagtaggcgtaggaaagcggctcaggccagaattccc
tcagatcctaatgcttggcaacaaatgcgcgaaaactatgaaactataatacttgaagat
aatgcattctctgagcaacatgaagtggagtatgctttgtggcagttgcattataggaga
atcgaggagctacgggcacactacagtgctgctctatcagcggtgtctcagagtgggaaa
ggttcaatgagaggtggacctgagcgggtcaccaaaattcgttcccagctgaaaactttt
ctctctcaggcaaccggcttttatcatgatttaatggttaagattagggcaaagtatggc
ctacctctgggtcactttgcagaagatctagagactcaaatttctttatcaaaagatgga
aatagattggtggagattaaaaaaggcttggtatcgtgcaaccgctgtttgatttatctc
ggggatcttgctcgatacaaaggtttatatggggaagatgattcaaaagctcgtgatttt
gctgcctcatatagttactacatgcaggcggcagcaatttggccctcaagtggcaaccct
catcatcagcttgcaatactggcatcgtactcgggggatgaactggtggcggtttacaga
tattttcgaagtctggcggtggataacccttttagcactgcaagagaaaacctgataata
gcatttgagaagaaccgacagatctactctcagctgcttggtgatgtgaaaccatcttct
gtcaagaccaggcaggtacgggtgaatggaagaggaagaggaaaaggtgacaacaagcct
acaacaaaggatgtcaaggtggaagcaactctctttaaagagaaatcacgcagtatggct
gaaattttgaaagcatttagcactagatttgtccgtctcaatggcattttatttacacgt
acaagcttagagactttcgaagaagttttttctttgaccaagagtgactttctagagctt
gtctcctctggtgcggttgaggggctgaattttggttcagatacttccgaatgtaggctc
ttgattataaggttgatagtgatactgatattcacggttcacaacgtaaatagggaaact
gaaaatcaatcatatgctgtaatcttgcaacgttcagttgtgctcaagaatgcttttact
gctattttcgagtttatggggcacattcttgagaggtgcatccagttgactgatccttca
gcaagctatatgttgcctggcatcatggtctttgtggagtggttagcctgtcgtcaagac
attgcagttggcagcgaacttgatgagagacaatctagtgctagatcttttttctggaat
cattgtgttacctttttcaataagcttctctcgagcagtttcatgtttgttaatcaggac
gaggatgatacttgcttctacaacatgagcagttatgatgaaaatgaaactggcaatcgg
cttgcactgcccgaggacttcgaactaagaggattccttcccctgcaagctgcgcaactc
gtacttgacttttcaaggaagcattcttttgaaagtgaaggtggcaagaaggaaaagaaa
gctcgtattgaaaggataatagctgctggaaagtctcttgctaatgtggttaaggttgga
cagcaggttatttattatgacactaggttgaagagctttgtttttggtgtcgaaccccaa
attgctgaaaaccccgtattagattttaaaggcgaagcgaatttggagggaagtaaaacc
acagccctgcagccaaaggcacagctgcatcttgatgtagatgatgaggatgaggtgatt
gtttttaagccagtagtcaataagaacaacactgatgtgattgattcaaacttgaccgtg
tctgaggttttcctgtctggtattgacgtctcaagtgttagtttgggaaatacatctgca
tatgtttctgcttcacatgatgatactattctgcagaactctttcaataccagctcaagg
ccacctatttctcttgacttcacagcccaatatcttcagccatcacaaccaagtgatttg
aactgggcaactgaacgaggttctgctgtcaatgggttttccaatttgagttttgtggaa
agtgacttctcttcaaaatccaagttgcaggatttttcagggcttttgcgccctgcccct
tcgacagcgcccttcccacagcctccgagtcttgatgctgtcaataggtatcctggatca
agtacagagactttaattccaaatcagtctgattctgttatgtcctcaggagtcaataca
gataccctatctaggaagccgtcattggccatggcagttggagcgaaaaagaatcccgta
agccgacctattcgacactcgggcccgccacctggatttaactctgttccttccaaacct
gttgatgagctgttttctgggataacattgaaggaagctccagcgatggatgattacagc
tggctagatggatatcggctaccagcatctgcacaaattggtggctttagcaattctatt
aatccagtgcaggctggcctacctccgaccaagagtgaaaactccattgggcttgtaagc
tttcctttccctggaaaacaagtgtctacatcgcgagcccaaatggacaaacaaaatatc
tggcaggactatcagtttcctggaactttgaatcagaatcatcagaaagcaaatattcaa
actattcctataggacaacaatatcaagggcagtctctctgggaaggtcgtttctttgtg
tga
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