Daucus carota (carrot): 108218775
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Entry
108218775 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108218775
03041 Spliceosome [BR:
dcr03041
]
108218775
03036 Chromosome and associated proteins [BR:
dcr03036
]
108218775
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108218775
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108218775
mRNA cycle factors
Common to processing body (P body) and stress granule
108218775
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108218775
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108218775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108218775
NCBI-ProteinID:
XP_017247366
LinkDB
All DBs
Position
4:43730426..43736216
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AA seq
616 aa
AA seq
DB search
MMKSSWADAVAEETAASGSVDSNVTSAPTAPTKSTYVPPHLRNRPVAAESPALPLSGPPS
GYNSTGYSAGGAGQRSDYGRQAYNTSSRGGGGWSNRGGRERDVNPFGNDDVNVDVEQAFS
GHENSGINFDAYEDIPVETQGDDVPPPVNTFAEIDLGHALNLNIQRCKYVRPTPVQRYTI
PISLAGRDLMACAQTGSGKTAAFCFPIISGILRGNIAQRPRGTRTVFPLALILSPTRELA
IQINEEAKKFSYQTGVRVVVVYGGAPINQQLRELERGVDILVATPGRLVDLLERAKVSLQ
MIRYLALDEADRMLDMGFEPQIRKIVEQMGMPPPGERQTMLFSATFPREIQRLASDFLLN
YIFLTVGRVGSSTDLIVQRVEFVQEADKRSYLMDLLHAQKDDGTHGKQPLTLVFVETKKG
ADSLEHWLSRNGFPATAIHGDRTQQEREYALRSFKSGNTPILVATDVAARGLDIPDVSHV
VNFDIPKDIDDYVHRIGRTGRAGKTGLATAFFNEGNMSLAKSLADLMQEAKQEVPAWLTH
YASRPSYGGGKNRRFGGGRSGGGRYGGHDIRRDSFYNNSGGGGNSGSYGGNTGGRYNSNY
GGGYGPGPGANSAWDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaatcttcatgggcagatgccgttgctgaagagactgctgcttctgggtctgtt
gatagtaatgtaactagtgcacctacagctcctaccaagtctacctatgttccaccccat
ctacgcaataggccagtcgctgcagagtcacccgctttgcctctcagtggtccaccatcc
ggttacaacagtacaggttatagtgctggtggggctggtcaaagatctgactacggccgc
caagcttacaacaccagcagcaggggtgggggtggttggagcaacaggggtgggagggaa
agggatgtaaatccttttggtaatgatgatgttaatgttgatgtggagcaggcattcagt
gggcatgaaaatagtggtattaattttgatgcttacgaggatatcccagtagagactcaa
ggggatgatgtaccacctcctgtcaatacatttgcagagattgatttgggacatgctctt
aatctgaatattcaaaggtgcaaatacgtcaggcctactcctgtgcagcggtacacgatc
cccatttccctagcagggagggatttgatggcttgtgctcaaaccggttctggcaagaca
gctgctttttgcttccccataattagtggaattttgaggggaaatattgcccagagacca
cgagggacccggacagtgtttccactagctcttattctttccccgacaagggagcttgcc
attcagattaacgaggaagcgaagaaattctcttatcaaacaggtgtcagagtagtggta
gtttatgggggagcaccaatcaatcaacagctaagagaacttgaaagaggagtggatatt
cttgtggcaactccagggagactagttgatttgcttgagagggcaaaggtctcattgcaa
atgattagatatttagctctagatgaggccgatcgcatgttggatatgggatttgaacct
caaattagaaagattgttgaacaaatgggcatgcctccgccaggtgaaagacagactatg
ctgtttagtgccaccttcccgagagaaattcagagattggcatctgattttcttttgaac
tacatattcttgactgttgggcgtgttggttcaagtacggatctgattgttcaaagagta
gagttcgttcaagaggctgacaagcgaagctaccttatggacctccttcatgcacagaaa
gatgatggaactcatggaaagcaaccgctaaccttggtgtttgtggagacaaaaaaggga
gcagattctcttgagcactggttgtctcgtaatggatttcctgcaacagctatacacggt
gatagaactcagcaggagagagaatatgcattgagatcctttaagagtgggaatacacca
atcttggtagcgacagatgtagcagcacgaggtcttgatattccagatgtttctcatgtt
gtcaatttcgacatcccgaaagacattgatgattatgtccaccggataggaaggacaggg
cgagctggaaagacgggattggcaacagctttctttaacgaaggcaatatgtcgttagca
aagtcgctagctgatctgatgcaagaagctaaacaggaagtacctgcatggcttactcat
tatgctagcagaccttcctatggtggcggtaagaacaggcgatttgggggtggacgatct
gggggaggaagatatgggggtcacgacatcagaagggattccttttataataatagtggt
ggaggtggtaattcgggctcttacggaggaaacactggtggaagatataacagcaattat
ggcggaggatatggtcctggacctggagctaacagtgcatgggatgagtga
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