Daucus carota (carrot): 108218858
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Entry
108218858 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108218858
KO
K12385
Niemann-Pick C1 protein
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
108218858
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108218858
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dcr02000
]
108218858
Transporters [BR:
dcr02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
108218858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Motif
Other DBs
NCBI-GeneID:
108218858
NCBI-ProteinID:
XP_017247484
UniProt:
A0AAF1AW79
LinkDB
All DBs
Position
4:41781947..41802271
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AA seq
1299 aa
AA seq
DB search
MSPIHINFSTLLRTAALCLFQVIFIVSVVNSERPKARILASSNVTGGQRHAVNYCAMYDI
CGARSDDKVLNCPFGSPAVQPSDLFSSKIQSLCPTIAGNVCCTEKQFDTLRSQVQQAVPF
LVGCPACLRNFLNLFCELTCSPNQSLFINVTSISKVKNNSTVDGIDFYVDDAFGKGLFES
CKDVKFGSMNTLAMDFIGAGAKNFKELYAFLGRKANLNAPGSPYAINFRSAVDESSAMEL
MNVTTYTCSDTSLGCSCGDCESSTVCSMSAPISSKEKESCSVRIGSLKARCIEFALAILY
ILLVSLFLGWGLFHKKKGKSPVSRTKPLVNVTDVGVLHHVNRQKDENVPMQMLEDAPQIR
NGVRLSIVQGYMSKFYRRYGTWVARNPLFVLCSSLVVVLVLCLGLIRFEVETRPEKLWVG
HQSRALQEKDFFDSHLAPFYRIEQLIIATKPDPEHGKSPKIVTENNIKLLFEIQKKVDAI
QANYSGLLISLTDICLKPLGQDCATQSVLQYFKMDPLNYDNYGQIGHLEYCFQQYSSADN
CRSAFKAPLDPSTALGGFSGNNYTEASAFIVTYPVNNAVDKKGNETKKAIAWEKAFIQLI
KDELLPMVQSKNLTISFSSESSIEEELKRESTADAITILISYLVMFAYISLTLGDTPSFT
SFYVSSKVLLGFSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV
HAVKRQQLELPLEGRISSALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV
LLDFLLQVTAFVALIVFDFLRAEDNRVDCFPCVKTSGSYADSDKGSDQRKPGLLARYMKE
VHAPILGIWGVKLVVISLFAALVLASIALSTRIEPGLEQQIVLPRDSYLQHYFDDLSEYL
RIGPPLYFVVKNYNYSSESSQTNRLCSISNCDSNSLLNEISKASLVPDSSYIAKPASSWL
DDFLVWMSPEAFGCCRKFTNGSYCPPDDQPPCCSSADGSCSTNGFCNDCTTCFRHSDLQK
DRPSTKQFKEKLPWFLNALPSADCAKGGHGAYTTSVELKDYEVGVIRASAFRTYHTPLNK
QIDYVNSLRAARKFTSRISDSLKIELFPYSVFYMFFEQYLDIWKTALINLALAIGAVFIV
CLAVTFSFWTSAIIILVLTMIVVDLMGVMAILNIQLNAVSVVNLVMAVGIAVEFCVHITH
AFLVTSGDRNQRAAAALGTMGASVFSGITLTKLVGVIVLCFSRTEIFVVYYFQMYLALVV
LGFLHGLIFLPVFLSMFGPPSRCVLIEKQDNRLSTESQP
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatacatatcaacttctcaacactcctgcgcacagctgcactttgtttgttc
caggtcatttttattgtatctgtagtaaattccgagcggcctaaagcacgaattcttgcg
tcttccaatgtcacaggagggcaaaggcacgctgtcaattattgcgcaatgtatgatatt
tgtggagcgcgaagtgatgataaagtacttaactgtccctttggttctccagccgtgcag
cccagtgacctattttcttcaaagatccaaagtttatgtccgacaattgcgggaaatgtc
tgctgcacagagaagcaatttgatactttgcggtcacaagttcaacaagcagttcccttt
cttgtaggttgcccagcatgcctaaggaattttttaaatcttttctgtgagcttacttgc
tctcctaatcagagtctgttcattaacgtgacttctatatccaaggttaagaacaattct
actgtggatgggatagatttttatgtagatgatgcttttggcaaagggttgttcgaatcc
tgcaaggatgtgaagtttggttccatgaatacactagctatggactttattggtgctggt
gctaaaaactttaaagagttgtatgcttttcttggaagaaaagcaaatctaaatgcgcca
ggatccccatatgcaatcaatttccgctcagctgttgatgagtcatctgcaatggaactt
atgaatgttactacttatacatgtagtgacacctcactgggctgttcttgtggtgattgc
gaatcgtccactgtctgctccatgtcagctccaatatcatccaaggaaaaggagtcttgt
tcagtgagaattggctcccttaaggcaagatgtattgaatttgctctagcaatcctctat
atcttattggtttctctgtttctaggatggggtttattccataaaaaaaagggaaagagc
ccagtttctagaacgaaacctttggtgaatgtcactgatgttggtgtacttcatcacgtc
aacaggcaaaaagatgaaaatgttccaatgcagatgcttgaggatgccccccaaatcaga
aatggtgtccgactttcaattgtccaaggatatatgtcaaaattttacaggagatatgga
acatgggttgctagaaatccattatttgtcttgtgttcatcattggtcgtcgttctagtt
ttatgtttaggcttaatccgttttgaagtcgagacacggcctgagaagctttgggtggga
caccagagtagagctttgcaagaaaaagacttctttgatagtcacctagcacctttctac
agaatcgagcagctaataattgcaacaaaaccggatccagagcatgggaaatctccaaaa
attgtaactgaaaataacatcaagttactttttgaaatacagaagaaggttgatgcaatc
caagcaaattattctggcttactaatatccctaactgacatatgcttgaagccgttaggc
caggattgtgcaactcaaagtgtgctgcagtatttcaaaatggatccattaaactatgac
aactatgggcagattgggcatttagaatactgttttcagcaatattcgtcagccgataac
tgtaggagtgcctttaaagctccacttgatccgagcactgcattagggggtttctctgga
aataattatactgaggcttctgcatttatagttacctatcctgtaaacaatgcggttgat
aaaaagggcaatgaaaccaaaaaagccatagcttgggaaaaggctttcattcagttaatt
aaggatgagcttttgccaatggtgcaatccaagaacttgacaatttcattttcatcagaa
agttctattgaagaggagttgaaaagagagagtactgcagatgctataactattctgata
agctatcttgtgatgtttgcttacatatccttgactctcggtgatactccaagttttacg
tctttttatgtttcatccaaggtcttgcttggtttttcaggggttatactggtgatgcta
tctgtccttggctcagttgggttctttagtgcgattggagtaaaatccacacttatcatc
atggaagtcataccttttcttgtattggctgttggggtagataacatgtgtatactggta
catgctgttaaaagacagcagttggagttacctttggaagggcgtataagtagcgcactc
gtagaagttggaccatccataacactagctagtttgtctgaggttttggcatttgcagtt
ggcagttttattccaatgcctgcatgccgcgtgttttccatgtttgcagctttggctgtt
ctgttggacttccttctgcaggttactgcttttgttgctttgattgtttttgattttttg
agagctgaagataacagggttgattgctttccttgtgttaaaacttctggttcatatgct
gattctgataaaggaagtgaccaacgcaaacctggattacttgctcgctatatgaaggag
gttcatgcacccatcctgggtatttggggagttaagttggtggttatatctctttttgca
gctcttgtgcttgctagtattgcattatctacacggattgaacctggtttggaacaacaa
attgttctaccaagagactcatatcttcagcactattttgatgatctttcggagtatctc
agaattggcccaccactatactttgttgtaaaaaactacaattatagttcagaatcaagc
cagaccaatagattgtgctccatcagcaactgtgactccaactctcttctaaatgagata
tcaaaagcatcattggttccggattcaagttacatagcaaagcctgcttcttcgtggctt
gatgactttcttgtttggatgtctccggaagcttttggttgctgccggaagttcacaaac
ggaagttattgtccacctgatgatcagccaccttgctgctcatcagctgatggctcttgt
agcacaaacgggttttgcaatgactgtaccacgtgtttccgtcattcagacttgcaaaag
gatcgtccatctactaaacaatttaaagagaagcttccctggttcctcaatgctcttcct
tctgccgactgtgcaaaaggtggtcatggagcctacactaccagtgtggaacttaaagat
tatgaggtcggtgtgattcgagcatcagcttttcgtacataccataccccgctgaacaaa
caaattgactatgtcaactcattgagggctgcaagaaaatttacatccaggatatctgac
tctttgaagattgagctatttccatattccgtgttctatatgttttttgagcaatacctt
gatatatggaagacagccttaataaatctggcactagctattggtgcggtatttatagtt
tgcttagctgtcacatttagcttttggacttcagctattataatacttgtgttgacgatg
attgtggtggatctcatgggcgtcatggcaattttgaacatccaactgaacgcagtctct
gttgttaatcttgtaatggcagtgggtattgctgttgagttctgtgtgcatattacacat
gctttcctggtgaccagtggagataggaatcaacgtgcagccgcggctttgggtacaatg
ggagcttctgttttcagcggcataacgctgaccaagttggttggggtaattgtactctgt
ttttcaaggactgaaatttttgtggtctattacttccaaatgtacttagccctggttgtc
ctcggcttcttgcatggactaatctttttgccagtatttttgagcatgttcggcccccct
tcaagatgtgtgctcattgagaaacaagacaataggctgtcaactgaatcacaaccataa
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