Daucus carota (carrot): 108218868
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Entry
108218868 CDS
T05350
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108218868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108218868
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
108218868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
108218868
NCBI-ProteinID:
XP_017247501
LinkDB
All DBs
Position
4:complement(45216873..45224527)
Genome browser
AA seq
932 aa
AA seq
DB search
MADKKELTPLSTSLSKLSGSLRGISTDKDFHFYNNFDAFKLPVAEISSASQLMLDAIAAN
SSQLFGKQLGLDDDDDDDAYDWLVNVNDEVFERLDSAIDEFETLRKSGKAVNVRAENGGG
EDLSLSEVKVAKKDDKVLGARPKIPFHIPSIVKPQKQYRILVNNSKEPFQHVWLQRSEDG
SRFIHPLEKFSPLDFADKNVSTVESVKPLPVDFTTYTLVENLDDLKELAAKLRCADEFAV
DLEHNQYRSYQGLTCLMQISTRTEDFVVDTLKLRIYIGPHLRELFKDPSKKKVMHGADRD
IMWLQRDFGIYVCNMFDTGQASRVLKLERNSLEYLLNHYCEVAANKEYQNADWRLRPLTD
DMLRYAREDTHYLLYIYDLMKIELLSLSTGSESSDGSLVEVYQRSYDICMQLYEKDVPTD
STLLHIYGIQSADLNAQQLAVAAGLSEWRDVVARAEDESTGFILPNKTLLEIAKQMPTTT
SMLRRAVKSRHHYIDRNLGSVVSIIRNSMQNAAAYETIAEKLKEDRQKAISDGKSVVADG
PEPLSNQAVPDTSDSVQNENILEIATSTSQVKRSEHQGSSDHATDNLNTQNDKGGSVPAL
PRNTFNMSNQIREGLGNEATIQVLKKPNRGFGALLGNPKRKHDPEKVESKEAKLEQIRSS
VNLPFHAFSGKVETLQPVEESAKPPQSLCHKEPVALSAAKSQGQDILVIEDGSDDDMLDE
DPKFADDKLEQTEGNTPADIPNSPESDEELLNVDDPKLMDNKLEQTEGSVVLSNNRPVLD
IIMLDDDSDEETVKDTPNSISDEFLQDKVSTPLSCNEKDETMSFSDPSSGHLQTSNGPGK
TKAVKNSQEQGPSSPLQIKPFDYEAARKEVHFGEDRRRNGGDEGEKNKRDKGNRKKNAGK
GQSEGGEESGGFQLGRRRQAFPVTGNRSATFR
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagaaagaactaacccctctctccacctctctctcaaaactctccggctca
ttacgcggcatctccaccgacaaagacttccatttttacaacaacttcgacgcattcaag
ctccccgtcgcagaaatctcatccgcttcgcagttaatgctcgacgcaatcgcagctaac
tcgtcgcagttgttcgggaagcaattaggtttagatgacgacgacgacgatgacgcgtac
gattggctggtgaatgtgaatgatgaggtgtttgagaggcttgattccgcgattgatgag
tttgagacgctgaggaagagtgggaaggcggtgaatgtgagggcggagaatggaggaggt
gaggatttgagcttgtcggaggtgaaggtagcgaagaaagacgacaaggtgttgggagcg
aggccgaagattccgtttcatataccgtcgattgtgaagccgcagaagcagtataggata
ctggttaataactcgaaagagccgtttcagcatgtttggttgcagaggagtgaggacggt
tcaaggttcattcatccattggagaagttttcgcccttggattttgctgataaaaatgtg
agtactgtggagtctgtgaaaccacttccggtggacttcacaacatacactcttgtggag
aaccttgatgatttgaaagaactagctgcaaaattacgttgtgctgatgagtttgcggtt
gatctggaacataatcagtatcgatcttatcaaggacttacttgcttaatgcaaatatct
actaggaccgaggattttgttgttgacacactaaagcttcgcatttatattggtccacat
ctaagagaacttttcaaagaccctagtaagaaaaaggtcatgcatggagcagatcgggat
attatgtggctgcaaagggattttggaatatacgtatgcaatatgttcgacactggacag
gcctcgagggttttgaagttggagagaaatagtctggagtatcttctgaatcactactgt
gaagttgcagccaacaaagaataccagaatgcagactggagactgcgtccgcttacagat
gacatgctaaggtatgccagagaagatacgcactatctgctgtatatctatgatttgatg
aaaattgagttgctctcactgtccactggatctgagagctctgatggctctcttgtagag
gtataccagcggagctatgatatctgcatgcagctatatgagaaagatgtcccgactgat
agtacactgctccacatatatgggatacagagcgctgaccttaatgctcagcaacttgca
gtagctgcagggctttctgaatggagggatgttgttgctcgtgctgaagatgaaagtact
ggttttatattgccaaacaaaacacttctcgaaatagctaaacagatgcctaccaccact
agcatgttacgacgagctgtaaagtcaagacaccattatatcgaccgcaatcttggttct
gttgttagcatcattaggaattcaatgcaaaatgcagccgcttatgaaactattgctgaa
aaactaaaggaggatcgccaaaaggcaatatctgatggaaagtcggttgtcgctgatggg
cctgaacctttgtctaatcaagctgtacccgatacttctgattctgtgcaaaacgagaat
atattggagattgcaactagtactagtcaggtgaaaagaagtgagcatcagggctcttct
gatcacgcaacggataatctgaatacacaaaatgataaaggtggcagtgtacctgcactt
ccaagaaatacctttaatatgtcaaaccagatcagagagggacttgggaatgaagcaact
attcaggtgcttaaaaaacctaatcgtggttttggggcattacttgggaatcctaagagg
aaacatgatcctgagaaagtggaaagcaaagaggctaagttggagcagattaggtcttct
gtgaaccttccattccatgcattctcgggcaaagtcgaaacattgcaaccagttgaagaa
tctgctaaaccaccccagagtttgtgtcataaagaacctgttgctttgtcggctgctaag
tcgcaggggcaagatattttagtgatagaagatgggtcagatgatgatatgcttgatgag
gatccaaaatttgcagatgataaactggagcagactgaaggcaacaccccagctgatata
cctaacagtcccgaatcagatgaggagctacttaatgttgatgatccgaagttgatggat
aataagttagagcaaactgaaggcagtgttgtactatctaataaccgccctgtgctcgat
atcataatgttggatgacgactccgatgaggagacggtgaaagatactccgaattccata
agtgatgaatttctgcaggataaagtaagcactcctttgtcttgtaacgagaaagatgag
acgatgtctttctccgacccgtcttctggacatctccaaacctcaaatggaccgggaaaa
accaaggcagttaagaattcgcaagagcaaggacctagtagcccactccagataaaacca
ttcgactatgaagctgctagaaaagaagttcattttggagaagatcgcaggagaaacggt
ggtgatgaaggtgagaagaataagcgtgataaaggtaatagaaaaaagaatgcaggtaaa
ggtcagtcggagggaggtgaagagagtggaggctttcagttgggtagaagacgccaagcc
tttccagtgactgggaaccgaagtgcaactttccgttga
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