Daucus carota (carrot): 108218973
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Entry
108218973 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108218973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108218973
03009 Ribosome biogenesis [BR:
dcr03009
]
108218973
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108218973
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
U1 related factors
108218973
Complex B
108218973
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108218973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
108218973
NCBI-ProteinID:
XP_017247662
LinkDB
All DBs
Position
4:complement(17859467..17870068)
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AA seq
658 aa
AA seq
DB search
MNPYDSRFADPSSYRPRRSDLIGPPSPMIPPMMGGGVPDFNRGGPSSYGMPPPLMGGGSG
RGGGFNGYPPFQPSVGSGFDIGRGGGDSRGRGFGNRGGGGFGGRMSSGGPGTHRGGRSYD
SGGRGYEPGHGISRGGSFSGRGGGRSADGGRGFGGGRGGGGGRGFDVGRGRGGRHDGGSR
GDLDNISLPRQDFGNLVPFKKDFYEESLSVRAMTEQEVAVYRARRDISVEGYDVPRPIRT
FMEANFPAYSLEVFTRLGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLMPALIH
VSAQPRLAQGEGPIVLVLAPTRELAVQIQQEATKFGARANIRCTCIYGGAPKGPQIRDLQ
RGVEIVIATPGRLIDILEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIIAQIRPDRQT
LYWSATWPKEVETLARQFLCNPYKVIIGSPVLKANQSIKQVIEVVTEVEKYNRLIRLLRE
VMDGSRILIFVETKKGCDHVTKSLRMDGWPALSIHGDKSQDERDWVLAEFKSGRSLIMTA
TDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTHSNAKHARDLI
KILQEAGQVVPVSLSSLARSSGGHGGGGNFRNRGRGGYNNRGQISGSNAIPIGGKMQW
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttacgactccagatttgccgacccttcttcctatcgtccacgtcgaagtgat
ttgattgggccaccttctccgatgataccgcctatgatgggtggcggagtgccagatttt
aatcgtgggggtccatcttcatatggtatgccacctcctcttatgggtggtggatctggt
agagggggtggttttaatggctacccacctttccagcctagtgttggaagtgggttcgat
attgggcgaggtggtggcgacagtagaggaagagggtttggtaatcggggtggtggaggt
tttggtggtaggatgagcagtggaggtcctgggacacatagaggaggtcgaagttatgat
agtggagggaggggttatgaaccaggtcatggaataagtagaggtgggagttttagcgga
aggggtggaggaagaagtgctgatggtggaagaggttttggcgggggcagaggtggtggg
ggtggaagaggttttgatgtaggccgtgggaggggtggtagacatgatggtgggtcaagg
ggggatctagacaatatttctcttccaagacaagattttggaaacttggtcccttttaag
aaagatttttatgaggagagtttatctgtgagagcaatgactgagcaggaggttgcggtt
tatcgtgcacgacgggatatatcagtggaaggctatgatgtgccccggcccatccggaca
tttatggaagcaaattttccggcttattcgcttgaggtctttacaagactgggattcgtc
gagccaacaccaattcaatctcaagggtggccaatggctttaaagggaagagacctgatt
ggtatcgcagagactggttctggaaaaactctggcatatctgatgcctgctctaattcat
gttagtgcacagcctcgtctagcccaaggtgaaggccccattgtactagtattagctcct
accagagaattggctgttcagattcaacaagaagctaccaagtttggagcacgcgcaaac
attagatgtacctgcatatatggtggtgccccgaaaggaccacagatccgtgatctgcaa
agaggtgttgaaattgttattgctactcctggtagactgatagatattctagaagctcag
cacacaaacttgaaaagagtaacctaccttgtgttggatgaggctgatcgaatgttggac
atgggatttgaacctcaaatacgtaaaattattgcccagatccgacctgacagacaaaca
ttgtattggagtgctacttggccaaaagaagtggagacattagcgaggcagttcttatgt
aatccatataaggtaataattggttcccctgtcttgaaagcaaatcaatcaataaaacaa
gttattgaagtggtaacagaagtggagaagtacaacaggttaatcagacttctgagagaa
gttatggatggaagccggatattaatatttgtggagacgaaaaagggttgtgatcacgtc
acaaagtctctgagaatggatggatggccagctttatccatccatggtgataaaagccag
gatgaacgggattgggtcctagctgagtttaaaagtggcaggagtcttataatgactgcc
actgatgttgctgcacggggtcttgatgtgaaagacataaaatgtgtaatcaactatgat
tttccttcaagtctcgaggattatgtgcatagaattggccgaactggtcgagcaggagct
aagggaacagcctattcattttttacacattcaaatgccaaacatgctagggatctaatt
aagatcctgcaagaagcagggcaagttgttcctgtttctttgtcatcattagctcgatca
tctggtggacatggaggtggaggtaatttccgtaacagagggcgaggaggctataataat
cgaggtcagatatctggatcaaatgccatcccaattggggggaaaatgcaatggtag
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