Daucus carota (carrot): 108219087
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Entry
108219087 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108219087
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108219087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcr03009
]
108219087
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108219087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
WD40_WDHD1_1st
WD40_Prp19
WD40
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
EIF3I
PEP5_VPS11_N
NOL11_N
Beta-prop_Nup120_160
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
108219087
NCBI-ProteinID:
XP_017247838
UniProt:
A0AAF0WZM8
LinkDB
All DBs
Position
4:complement(43153286..43162359)
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AA seq
806 aa
AA seq
DB search
MITGGKSYVSSPPAFSNDAKKLLICTGSSVSIFSTSTALQISELEGHTDLVTSVIVVPAS
SKLLNYCWTSSLDGTIRYWDFSVAELVKTITISLPVHSMVIPSLLSKSSENDEKQPDLFA
YVSVDGSQGKEKLPNTLCGQIRKCNLTKSRMVGAVTLAETKKPEFVTSSPAGEYIGIKDK
RKLRIWEVPTKDSERVFYKKIKLHHTKKITTFAFHPTERIVAAGDATGRILIWRGFGDKT
LCVRDKSANEDLMNIDDGRAGVRGEDDADSCTTWHWHSAEVKVLFFSSDGAYLYSGGKEG
VLMVWQLDTEKRKFLPRIGSPLLYYTSSRDPSISTISCSDNRIHILKMPSMEIVKSISGI
KLPRAVPEVLDGSCNGLAFNQTSGVAAICTDNYCIQFYNLFDDREIAEVQVCERNHQPVD
EVTVTISVVALSPDGCVMCTVENRLPEDGIGGLVSLKFWVCGSQSTNFSLSTIVYEPHRN
ASISEIAFHPTRHMAVSSSYGGDFKVWVSKNAIEQKDQARPINGWKCHAVGSYKKKPLTA
AAFSVDGSVLAVAAETVITIWDPENNVLVAVIGESLEPISRIAFIGKSDYLVSASRGSEP
QLSVWSLSRMCVSWSYKLHIEAITSTMGDSFFAVLGLFPKTSNESTLHDVDGVILLFKAE
DPVPVATWFVRKARGGGLAFVHLNPESIEGNTSDSTPAPELLAYINNDHEYVIFSPHGDQ
LDERGISLRENHVMPEETGRLGYESIYGELADIKPLNNLNSPASVLPSGRPWETIFSGSS
HNLPPFTKLCSVFLESLLEKRTTDVE
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgataactggcggcaagagctacgtgtcatcgccgccggcgttctctaatgacgccaaa
aagttacttatttgtaccggaagttccgtctcaattttcagcacttcaactgctttacag
ataagtgagctagaaggtcacactgatcttgtgacatcggttatagtggtgccagcttcg
agtaagttgttgaattattgctggacatcttctctggatggcactattaggtactgggat
ttttcggttgccgaattggtcaaaaccatcaccattagcttacccgttcactctatggtg
attcctagtctattatctaagtcgtccgagaatgatgagaaacaacctgatctttttgct
tacgtgtctgttgatggaagccaaggaaaggagaagctgcccaacacattatgtggacaa
attcggaagtgcaacttgactaaatctcgcatggttggtgctgtgactttggcagagact
aagaaaccagagttcgtgacatcttcgcccgctggggaatacattgggattaaagataag
aggaaacttcgtatatgggaagtcccaacaaaagattcagagagagtcttttataagaaa
ataaagttgcatcacactaaaaaaataactacctttgcttttcatccaactgaaagaatt
gtagcagcaggtgatgcaacagggaggatcttgatttggagaggttttggtgacaaaaca
ttatgtgttcgtgataaatcagctaatgaagatttgatgaacattgacgatgggagagct
ggtgtaaggggggaagacgatgctgattcttgcaccacgtggcattggcattctgcagaa
gtgaaggtcttatttttctcttctgatggagcatatctatattcaggtggcaaagaagga
gtcctaatggtttggcagctagacacggagaaaaggaagtttctacctcgtataggatct
ccactgttgtattatacaagttctcgagatccctcaatttccactatatcatgttctgat
aatcgtattcatatactaaagatgccttcaatggaaattgtgaagtccatttctggaatt
aagcttcctcgtgcagtcccagaggtgcttgacggttcatgtaacgggcttgcctttaat
cagacttctggagtagctgcaatatgtacagacaattactgtattcagttctacaatttg
tttgatgaccgtgaaattgcggaggttcaagtctgtgaaagaaaccatcagccggttgat
gaagtcacggtaacaatttcagttgtggctctttccccagatggatgtgtgatgtgtact
gttgaaaataggctgcctgaagatggaattggtgggctagtgagtctaaagttctgggtg
tgtgggtcccagagcacaaacttcagcttgtccactattgtatacgaaccacacaggaac
gcaagtatttctgaaatagcttttcatcctactcgtcatatggctgtcagctcttcttat
ggtggtgattttaaggtgtgggtgagcaaaaatgcaattgagcagaaggatcaagcacgc
ccaatcaatggttggaaatgtcacgctgttggctcctacaaaaaaaagcccttgacggca
gctgcattttctgtcgatggttctgttctggctgttgctgcagaaactgttattacaata
tgggatcctgagaacaatgttttagtggctgtaattggagaaagccttgagcctatctca
agaattgcattcattgggaagtcagactatcttgtatccgcatctagaggttcagaacca
caactgtctgtctggagtctgtccaggatgtgtgtgtcatggtcatataagcttcatata
gaagccataacttcgaccatgggtgattctttttttgctgtgcttggcctttttcctaag
acatccaacgaaagcacattacatgatgtagatggagtcatcttgttattcaaagcagaa
gatcctgttcctgttgcaacctggtttgtgaggaaggccaggggtgggggacttgcattt
gttcatttgaatcccgaatccatcgaaggcaatacttcagatagcacaccggccccagaa
ttacttgcatatataaataatgatcatgaatatgtgatttttagcccacatggcgatcaa
ttggatgaacgtggcatttctcttcgggaaaatcatgtcatgcctgaggaaactgggcga
cttgggtatgaatctatatatggggagctagcagatattaagccgttgaacaatttaaat
tcaccagcctcagtactaccatctggtcgaccctgggaaacaatttttagtggatcttca
cataatctacctcccttcactaagttatgttcagtctttctagaatcattactggaaaaa
aggacgacagatgttgaatga
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