Daucus carota (carrot): 108219090
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Entry
108219090 CDS
T05350
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3
KO
K14948
polypyrimidine tract-binding protein 2
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108219090
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108219090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_10
RRM_ACIN1
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
108219090
NCBI-ProteinID:
XP_017247842
UniProt:
A0A165XI62
LinkDB
All DBs
Position
4:complement(37413897..37423738)
Genome browser
AA seq
444 aa
AA seq
DB search
MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVTTAVNALQF
YTNVQPSIRGRNVYIQFSSHQELTTVEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
FSPHGFVEKIVTFQKSAGFQALIQFQLKQSAVTARNSLQGRNIYDGCCQLDIQFSNLDEL
QVNYNNERSRDFTNPSLPAEQRGRSSQPGYVDAGGVYGFQPSGVRPVGFPQMDNAAAIAA
AFGGGLPPGITGTNDRCTILVSNLNTDKIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQ
MGDGFQAELAVHFLKGATLFEKRLEVNFSKHPNITTGTETHEYSNSNLNRFNRNAAKNYR
YCCSPTKMIHLSTLPQDVTEEEIVTHLEEHGTIANTKVFDMNGKKQALVMFETEEQATEA
LVCKHATSLGGQMIRISFSQLQNI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccttctaaagttatccatgtgcgcaatgtgggccatgagatttctgagaat
gatttgcttcagctgtttcagccttttggagttattaccaaactggtgatgcttcgtgca
aaaaatcaggctcttctccaaatgcaagatgttactacagccgtgaatgcattacaattc
tacacaaatgttcagccgagcataaggggaagaaatgtttacatccagttttcatctcac
caagaactaactactgttgaacagaatgcacaaggacgaggagacgagcctaatcgaata
ctcttagttacaatccatcacatgctataccctataaccgtggaagtgctgcatcaagtg
ttttctcctcatggatttgtggagaagatcgtcacttttcagaagtcagctggttttcaa
gctttaattcaattccaactgaagcagagtgctgttactgctagaaactctcttcaaggc
cgtaatatatatgatggctgctgtcagctggacatccagttctcaaaccttgatgaatta
caggtgaactacaataatgagagatcaagggattttacaaatccgtcccttcctgcagaa
cagaggggcagatcctcacaacctggttatgttgatgcaggaggtgtgtatggctttcaa
ccttctggagtcaggcccgttggatttccgcagatggacaatgctgctgcaattgcagct
gcctttggaggtggtctgcctcctggtataactggaacgaatgacaggtgcaccattttg
gtgtctaatctaaacactgataaaattgacgaggacaaattatttaacttgttctcacta
tatgggaacatagtgagaattaaacttctaaggaataaacctgatcatgcattagttcag
atgggcgatggatttcaggctgagttggcagtacattttttgaagggggcaaccttattc
gagaaacgtttggaggtgaatttttcaaaacatccaaacattacaaccggtactgagaca
catgagtattctaattcaaatctcaaccgttttaaccgcaatgctgcaaaaaattaccgt
tactgctgttcaccaacgaagatgatacatttgtctacccttccgcaagatgttactgag
gaggagatcgttactcacctagaagagcatggaacaattgccaacactaaagtctttgat
atgaatggaaagaaacaggctctagtaatgtttgagactgaggagcaggctactgaggct
ctggtttgcaagcatgctacatccctgggtggtcaaatgatccgaatttccttttctcag
ttgcaaaatatatga
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