KEGG   Daucus carota (carrot): 108219258
Entry
108219258         CDS       T05350                                 
Name
(RefSeq) protein ALTERED SEED GERMINATION 2
  KO
K11807  WD and tetratricopeptide repeats protein 1
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dcr04121]
    108219258
Ubiquitin system [BR:dcr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     108219258
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR35_TULP_N ANAPC4_WD40 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_IFT140_1st PROPPIN Beta-prop_VPS8
Other DBs
NCBI-GeneID: 108219258
NCBI-ProteinID: XP_017248095
LinkDB
Position
4:complement(49857134..49880697)
AA seq 763 aa
MDSFPFHDGNISQFIQHRSIETRSDINHGLQMHSSLVRRLSQEKELEGHQGCVNAVSWNS
SGSLLISGSDDTRINIWSYSDHKLLQSVETGHSANIFCTKFVPETSDDIVVSGAGDAEVR
VFHLSRLDGGGHEENTINPSAVFQCHTRRVKKLAVEAGNPNVVWSASEDGTLRQHDLREG
ASCPPASSAHQECRNILLDLRCGAKKSLSDTPKQNLALKSFEISSSRPHLLVVGGSDAFA
RLYDRRMLPPLSSSMKKLSPPPCVNYFCPMHLSDRAISSLHLTHVAFSPDGDEVLLNYSG
EHVYLMDINPSSGSAMRYTSGDAMTLMSLNPILNGVDLKSSVSRVFPNGFPRKRNIVSRL
DKCRKLVQIAEKSLKEGTNCYYAIEVCNEVLDGHGHEIGSVLMHECLCIRASLLLKRNWK
NDAYMAIRDCQRARKIDSSSFRALHCISKALSLLRKHKEALDFAIAAETLAPSNSEIGRT
MESIREELAAVSAESEKNKSSNIAPTNESRAQGTLSLSDILYRSEAHIDSSSDDPRSERE
DSDYDEELDLDIETSISGDEGHDTEADVVHRSINLRFHGKDESAVGGADHANVSFGSPKS
QSDEKTYQPEAVIDMKQRYCGHCNVGTDIKQASFLGQRGDYVASGSDDGRWFIWEKGTGR
LMKVLLGDEAVVNCVQCHPFDCTIATSGIDNTIKIWTPSASVPSIVTGGAAGPETADVLD
IMESNQRRLSRNREAMLPIELLERFRMHEFTEGTLHPFECTQS
NT seq 2292 nt   +upstreamnt  +downstreamnt
atggactcctttccttttcacgacggcaacatctctcaattcattcaacatcgctctatc
gaaactcgctctgacattaatcatggattgcaaatgcattcatcgctggtacgcaggctc
tcccaggaaaaagaattagaggggcaccaaggttgtgtgaatgctgtttcttggaactca
agtggctctcttttgatatccggatctgatgatacacggattaacatttggagttattca
gaccataagcttttacaatctgtggaaactggtcatagtgccaatatattttgcacaaaa
tttgtccctgaaacttcagatgacatagtagtttctggtgcaggagatgctgaagtacgc
gtttttcatttgtctcgtttggatggcggaggacacgaagagaatactataaatccatca
gcagtctttcaatgtcacaccagaagagtaaaaaaacttgcagtggaagctggaaatccc
aatgtggtctggagtgccagtgaagatggcactttgcggcagcatgatcttcgggaaggt
gcatcctgtcctcctgccagctctgctcatcaagaatgtcgcaacattctacttgatttg
cgatgtggggctaaaaagtctttatctgacactcctaagcaaaatctcgcactgaaatca
tttgagataagttcatcgaggcctcacttgcttgtcgttggtgggagtgatgcctttgct
cgtttatatgatagacggatgctgccgcccctatcttcttctatgaaaaagttgtcacca
cctccatgtgtcaactacttctgccccatgcatctttcagatcgtgcaatttctagcttg
cacctaacccatgttgcatttagtccagatggagacgaagtgcttcttaactatagtgga
gagcatgtttatttgatggatataaatccttccagtgggagtgctatgcgatatacgtct
ggagatgccatgacgcttatgagtttaaatcccattcttaatggagtggacttgaagtct
tcagtgtctagggtcttcccaaatggtttccctagaaagagaaacattgtttctaggctc
gacaagtgccgaaaattagtccagatagctgaaaaatctttaaaagaggggacaaactgt
tattatgctattgaagtttgtaatgaagtcttggatgggcatgggcacgagattgggtct
gtgttgatgcatgaatgtctatgtatacgggcatctttacttctgaagcgcaactggaaa
aatgatgcctatatggcgataagagattgtcagagggctagaaagatcgattcttcttcg
tttagggcactccattgtatttctaaagctttgtccctgttaagaaagcacaaggaagct
ctagactttgccattgcagctgaaacactggctccatcaaattcagaaatcggaagaaca
atggagtctatacgagaggagctcgctgcagtgtcagctgaatctgagaaaaacaagtcg
agcaacatagctcccacaaatgaatctagagctcaaggaacactatctttgagtgatatc
ctttatcgttctgaagcgcatattgattcgtcatcagatgatccgaggtcggagagggaa
gattctgattatgacgaagaattggatttggatattgaaacatcaatatcaggtgatgaa
ggacatgatactgaagcagacgtggtccatcgaagtataaatctaagatttcatggcaaa
gatgaatcagcagtaggtggtgcggatcacgcaaatgtttcttttggatcccctaaatct
caaagtgatgaaaaaacataccagcccgaggctgtcatagatatgaagcagagatactgt
ggccactgtaatgtggggaccgacataaaacaagccagttttcttggccaacgaggcgat
tatgttgctagtggaagtgatgatggtagatggttcatctgggaaaaaggaactggcaga
ctaatgaaagtgctgcttggtgatgaagctgtcgtgaactgtgtgcagtgccatccattt
gattgcaccattgctactagtgggattgataatactatcaagatttggacacctagtgct
tcagtcccatccattgtgactggtggagcagctggaccagagactgcagatgtcttggat
atcatggaaagcaatcagcggaggctgtctcgtaaccgtgaagccatgctacccattgag
cttttggagaggtttcgaatgcacgagtttacagaagggaccctccacccgtttgagtgt
acacagagctaa

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