Daucus carota (carrot): 108219258
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Entry
108219258 CDS
T05350
Name
(RefSeq) protein ALTERED SEED GERMINATION 2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108219258
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108219258
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR35_TULP_N
ANAPC4_WD40
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_IFT140_1st
PROPPIN
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
108219258
NCBI-ProteinID:
XP_017248095
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Position
4:complement(49857134..49880697)
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AA seq
763 aa
AA seq
DB search
MDSFPFHDGNISQFIQHRSIETRSDINHGLQMHSSLVRRLSQEKELEGHQGCVNAVSWNS
SGSLLISGSDDTRINIWSYSDHKLLQSVETGHSANIFCTKFVPETSDDIVVSGAGDAEVR
VFHLSRLDGGGHEENTINPSAVFQCHTRRVKKLAVEAGNPNVVWSASEDGTLRQHDLREG
ASCPPASSAHQECRNILLDLRCGAKKSLSDTPKQNLALKSFEISSSRPHLLVVGGSDAFA
RLYDRRMLPPLSSSMKKLSPPPCVNYFCPMHLSDRAISSLHLTHVAFSPDGDEVLLNYSG
EHVYLMDINPSSGSAMRYTSGDAMTLMSLNPILNGVDLKSSVSRVFPNGFPRKRNIVSRL
DKCRKLVQIAEKSLKEGTNCYYAIEVCNEVLDGHGHEIGSVLMHECLCIRASLLLKRNWK
NDAYMAIRDCQRARKIDSSSFRALHCISKALSLLRKHKEALDFAIAAETLAPSNSEIGRT
MESIREELAAVSAESEKNKSSNIAPTNESRAQGTLSLSDILYRSEAHIDSSSDDPRSERE
DSDYDEELDLDIETSISGDEGHDTEADVVHRSINLRFHGKDESAVGGADHANVSFGSPKS
QSDEKTYQPEAVIDMKQRYCGHCNVGTDIKQASFLGQRGDYVASGSDDGRWFIWEKGTGR
LMKVLLGDEAVVNCVQCHPFDCTIATSGIDNTIKIWTPSASVPSIVTGGAAGPETADVLD
IMESNQRRLSRNREAMLPIELLERFRMHEFTEGTLHPFECTQS
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggactcctttccttttcacgacggcaacatctctcaattcattcaacatcgctctatc
gaaactcgctctgacattaatcatggattgcaaatgcattcatcgctggtacgcaggctc
tcccaggaaaaagaattagaggggcaccaaggttgtgtgaatgctgtttcttggaactca
agtggctctcttttgatatccggatctgatgatacacggattaacatttggagttattca
gaccataagcttttacaatctgtggaaactggtcatagtgccaatatattttgcacaaaa
tttgtccctgaaacttcagatgacatagtagtttctggtgcaggagatgctgaagtacgc
gtttttcatttgtctcgtttggatggcggaggacacgaagagaatactataaatccatca
gcagtctttcaatgtcacaccagaagagtaaaaaaacttgcagtggaagctggaaatccc
aatgtggtctggagtgccagtgaagatggcactttgcggcagcatgatcttcgggaaggt
gcatcctgtcctcctgccagctctgctcatcaagaatgtcgcaacattctacttgatttg
cgatgtggggctaaaaagtctttatctgacactcctaagcaaaatctcgcactgaaatca
tttgagataagttcatcgaggcctcacttgcttgtcgttggtgggagtgatgcctttgct
cgtttatatgatagacggatgctgccgcccctatcttcttctatgaaaaagttgtcacca
cctccatgtgtcaactacttctgccccatgcatctttcagatcgtgcaatttctagcttg
cacctaacccatgttgcatttagtccagatggagacgaagtgcttcttaactatagtgga
gagcatgtttatttgatggatataaatccttccagtgggagtgctatgcgatatacgtct
ggagatgccatgacgcttatgagtttaaatcccattcttaatggagtggacttgaagtct
tcagtgtctagggtcttcccaaatggtttccctagaaagagaaacattgtttctaggctc
gacaagtgccgaaaattagtccagatagctgaaaaatctttaaaagaggggacaaactgt
tattatgctattgaagtttgtaatgaagtcttggatgggcatgggcacgagattgggtct
gtgttgatgcatgaatgtctatgtatacgggcatctttacttctgaagcgcaactggaaa
aatgatgcctatatggcgataagagattgtcagagggctagaaagatcgattcttcttcg
tttagggcactccattgtatttctaaagctttgtccctgttaagaaagcacaaggaagct
ctagactttgccattgcagctgaaacactggctccatcaaattcagaaatcggaagaaca
atggagtctatacgagaggagctcgctgcagtgtcagctgaatctgagaaaaacaagtcg
agcaacatagctcccacaaatgaatctagagctcaaggaacactatctttgagtgatatc
ctttatcgttctgaagcgcatattgattcgtcatcagatgatccgaggtcggagagggaa
gattctgattatgacgaagaattggatttggatattgaaacatcaatatcaggtgatgaa
ggacatgatactgaagcagacgtggtccatcgaagtataaatctaagatttcatggcaaa
gatgaatcagcagtaggtggtgcggatcacgcaaatgtttcttttggatcccctaaatct
caaagtgatgaaaaaacataccagcccgaggctgtcatagatatgaagcagagatactgt
ggccactgtaatgtggggaccgacataaaacaagccagttttcttggccaacgaggcgat
tatgttgctagtggaagtgatgatggtagatggttcatctgggaaaaaggaactggcaga
ctaatgaaagtgctgcttggtgatgaagctgtcgtgaactgtgtgcagtgccatccattt
gattgcaccattgctactagtgggattgataatactatcaagatttggacacctagtgct
tcagtcccatccattgtgactggtggagcagctggaccagagactgcagatgtcttggat
atcatggaaagcaatcagcggaggctgtctcgtaaccgtgaagccatgctacccattgag
cttttggagaggtttcgaatgcacgagtttacagaagggaccctccacccgtttgagtgt
acacagagctaa
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