KEGG   Daucus carota (carrot): 108219440
Entry
108219440         CDS       T05350                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108219440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcr03041]
    108219440
Spliceosome [BR:dcr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    108219440
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Gbeta Beta-prop_WDR3_2nd WD40_WDHD1_1st EIF3I WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Aladin NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 PRP4 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_Vps41 WD_LRWD1 WD40_like Beta-prop_SCAP Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Beta-prop_SPT8 Tricorn_2nd
Other DBs
NCBI-GeneID: 108219440
NCBI-ProteinID: XP_017248386
UniProt: A0A165XXA1
LinkDB
Position
4:complement(41038981..41043846)
AA seq 578 aa
MVMDIDEEKSVSAAHTEPSVDGHTVAAAIPSIPVPVPHEAVQPVISPLVPVPILPAIAPI
PGVPTIPRPLAPLPPRPPIPKPPQTQNGDIRGSDTDSDQDESGAQRTTADYEISEESRLV
RERQEKAMQEFLMKRRAAALAVPTNDMAVRARLRRLGEPMTLFGEREMERRDRLRTLMGK
LDSEGELERLMRVHEEEEAAAAVSISDGAEDENIQYPFYTEGPKNLLEARKEIAKYSLAR
ASMRLQQAKRKRDDPDEDLDAEINWALEQAASLSLNCDEIGDDRPLLGCSFSHDGEMLAT
CALNGVAKIWSMPQVRRVCTLKGHTVHATDVAFSPINNTLATASADRTAKLWNSEGVLLR
TFEGHLNRLARIAFHPSGKYLGTTSFDKTWRLWDVETAEELLLQEGHSRSVYGLSFHKDG
SLAASCGLDSLARVWDLRTGRSVLSLEGHVKPIYGISFSPNGYHLATGGEDNTCRIWDLR
KKKSFYIIPAHSKLISQVKFEPQDGYFLLTASHDMTAKVWSSRDFKPVKTLSGHEDKLSS
LDVVSDGQYVATVSYDRHIKLWSCRDMEKAAEKGMDID
NT seq 1737 nt   +upstreamnt  +downstreamnt
atggtcatggacatagatgaggagaagtctgtttcagctgcacatacagaaccttctgtt
gatggtcatactgtggctgctgcaattccatcaattccagttccagttccacatgaagcg
gttcaacctgtgatttccccattagttccggtccctattttgccagctattgctccgata
cctggagttcctacaattcctcggccattagcacctctccctccccgtcctcccattccc
aagccacctcagacacaaaatggtgacatcagaggcagtgatacagattctgatcaggac
gagtctggagctcagcggaccactgccgactatgagatctcagaagagagcagactagtt
agagaaaggcaggaaaaggccatgcaagaatttttaatgaaaagacgtgctgctgccctc
gcagttccaaccaatgacatggccgttcgagctcgtcttcggcggctcggtgaacctatg
actctttttggagaaagagagatggaaagacgagaccgtttgcggactctcatgggtaag
ctggattctgagggagagttggaaaggctaatgagggttcacgaagaggaagaagctgct
gccgctgtgtcaatatcagatggggcagaagacgaaaatatccagtatcccttttatact
gaaggcccaaaaaaccttttagaagcccggaaagaaattgcaaagtattctcttgcgaga
gcatctatgcgccttcaacaagcaaaaaggaaacgagatgatcctgatgaagatttggat
gcagaaattaactgggctttggagcaagctgcaagtttatcccttaattgtgatgagata
ggggatgaccggccgctgttaggatgctccttttcacacgatggggagatgcttgctacc
tgtgctttaaatggagtcgcaaagatatggagcatgcctcaggtgcgaagagtgtgtact
ttgaaggggcacacagtccatgctaccgatgttgctttttcacccattaacaatactttg
gcaactgcatctgctgatcgcactgcaaagttgtggaatagtgaaggtgtgcttctcaga
acttttgagggacatttgaatcgccttgcgcgcattgcattccatccatcaggaaaatac
ttgggtacaactagctttgacaagacctggagattatgggatgttgaaactgctgaagag
ctgcttctgcaagaaggtcatagtaggagtgtgtatggactatcttttcacaaagatgga
tctttggccgcatcttgtggacttgattcacttgctcgtgtgtgggaccttcgcacaggg
agaagtgttctttccttggaaggtcatgttaagccaatatatggtattagtttttctcca
aatggctatcacttggctactggcggtgaagataatacctgtcgaatatgggatttgaga
aagaagaaatcattttacataattccagctcattcaaagcttatatcccaagtgaaattt
gaacctcaggatgggtactttctgctaactgcttcccacgatatgacagcgaaggtttgg
tcgtccagagatttcaagcctgtaaagacgctgtctggtcatgaagataaactttcatca
ttggatgtagtatcagatggccagtatgttgccacagtttcatatgatcgtcacatcaag
ctgtggtcatgtagagacatggaaaaggctgctgaaaagggtatggatatcgattga

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