Daucus carota (carrot): 108219444
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Entry
108219444 CDS
T05350
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108219444
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108219444
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108219444
NCBI-ProteinID:
XP_063947964
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Position
4:32644418..32648518
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AA seq
384 aa
AA seq
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MGNHHGRTSNGHRKNHYIVPNSNSAAPPYYNNPSAPSSQSQPSSSSSSDMGLSLPYAHVD
SNLRALAGQAEGFGRCAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGTIE
LSSYLNVSSHKTIDGRGQKIKLTGKGLRLKECEHVIVCNLDFEGGRGHDVDGIQIKPHSK
HIWIDRCSLRDYDDGLIDITRESTDITISRCHFSQHDKTMLIGADASHTGDRCIRITIHH
CFFDGTRQRHPRVRFGKVHLYNNYTRYWGIYAICASVESQIYSQCNIYEAGQKKVAFKYY
TEKAGDKEEASSGCIISEGDLFIAGTQPGLLDVAAQHTTFHPSEFYPTWTVEPPSDSLKQ
VLQHCSGWQSLPLPADQLPAAKQQ
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcatcacggacgtacctcaaacggccaccgcaagaaccactatatcgtcccc
aacagtaactcagctgctccaccttattacaataacccatcagcaccatcctctcagtct
cagcccagcagctcaagtagcagcgacatggggttatctctgccttatgctcatgttgac
tccaatttgcgtgctctcgccggccaggccgagggctttggacgctgcgccattggtggc
cttcacggtcccctctatcacgtcaccaccctcgcagatgacgggcctggatcacttcgt
gatggatgccgcaaaaaggaacctctctggattgttttcgaagtttcaggcaccatagag
ctctcctcatacttgaatgtgtcatcacataagaccatagatgggcgggggcaaaagatt
aagctcactggaaaaggcttgaggctgaaggaatgtgaacatgtaattgtatgcaactta
gatttcgaaggtggtaggggacatgatgtggatggtattcaaattaaacctcattcgaaa
catatatggattgaccgttgtagcctacgtgattatgatgacggtctgattgatatcaca
agggaaagcacagatattactatctcacgatgccacttctctcagcatgacaagacaatg
cttattggagcagacgcttctcacactggtgacagatgtattcgcattaccatacaccac
tgctttttcgatgggacccgacagcggcatcctcgtgttagatttgggaaagtacatctg
tacaataattacactagatactggggaatatatgctatatgtgctagtgtagaatcacag
atatactcgcaatgcaatatatatgaagcaggacagaagaaggtggcattcaaatattat
actgagaaggctggcgacaaggaagaagcaagttctggctgcatcatatcagaaggggac
ttgtttatcgcaggaacccaaccaggcctactggacgtggcagcccaacataccacattt
catccttcagaattctaccctacctggacggttgaacctccaagtgattctctcaagcaa
gttcttcagcactgttctggatggcaatctttaccgctaccagctgatcagttaccagct
gctaagcaacaataa
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