Daucus carota (carrot): 108219567
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Entry
108219567 CDS
T05350
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108219567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108219567
03036 Chromosome and associated proteins [BR:
dcr03036
]
108219567
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108219567
Coactivators
SAGA/TFTC/STAGA complex
108219567
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108219567
STAGA complex
108219567
TFTC complex
108219567
SAGA complex
108219567
SLIK complex
108219567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_IP5PC_F
LisH
PALB2_WD40
Cytochrom_D1
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
108219567
NCBI-ProteinID:
XP_017248560
UniProt:
A0AAF0WWG3
LinkDB
All DBs
Position
4:29797144..29814252
Genome browser
AA seq
664 aa
AA seq
DB search
MDEEEIEKVVLAYLKKKGLKQTELAFQEEQQQVKNNADPDVSKQVISLTEPDNVPEQYED
GYCKLRAWTYSSLDLYKHELLRILYPVFVHCFMDLVAKGHIQEARAFFNKFREDHEMMHL
RDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYDLMMQYLHKSQSITMLGIINEH
INFQVSPGQPISLSDDTEVVTLVGSGQDTANLINQKEIHWGLLEDSVEERLEKTLLSDTE
KAEGETKEGESEENKKRSIEGGKQGTSLKKLKKDKVVSAAAKAAKTEGNVSAAPRVKPEL
SLPVIPTEVEYSILDDLRNRVQLSNVALPSVSFYTFLNTHNGLNCSAISHDGSLLAGGFS
DSSLKVWDMALLGQQTDNSILPEENESARSAAGTNSGKRSYTLYRGHSGPVYSAAFSPFG
DFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVKFSPAGHYFASASHDRTARIWSMD
RIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQNGECVRIFIGHRSMILSL
AMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHSTCVWTLDYSCEGSLLASGSADCTV
KLWDVTSSTARVPKSEENKTGSTTNRLRSLKTLPTKSTPVHALKFSRRNLLFAAGPISAN
GSTY
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaggaaattgagaaagtcgtgttggcgtatttaaaaaagaaggggttaaag
cagaccgagcttgcgtttcaagaggaacagcaacaagtcaaaaacaatgctgaccctgat
gtttccaaacaagttatttcgctcacagagcccgacaatgttcctgaacagtatgaagat
ggatactgcaagctaagggcatggacttatagttcgttggatctatataagcatgagttg
cttcgtatcctgtatcctgtttttgtccattgcttcatggatcttgtggcgaagggtcat
attcaagaagctcgggccttctttaataaattccgcgaggatcatgaaatgatgcatcta
cgtgacctccaaaagttggaaggcgttctgtcaccttctcatctggaggagatggaattt
gctcattctttgaggcagagtaaagtgaacataaagatatgtcagtactcttacgatctg
atgatgcaatatctacacaagtcacaatccattactatgcttggaattataaatgagcat
atcaacttccaagtatctcctggacagccaatctcgctatctgatgatactgaagttgtc
acgctagttggaagtggccaagatactgctaatctaataaaccagaaagaaatacattgg
ggtttgcttgaggattctgtagaagaacgattggaaaagactctgctttctgatacagaa
aaggcagaaggagaaacaaaagaaggggaatccgaagagaataagaaaaggtcaattgag
ggaggaaagcaaggtacatctcttaaaaaactgaaaaaagacaaagtcgtcagtgcagca
gcaaaagctgccaagactgagggaaatgtgtctgccgctccacgtgtcaaaccagagctt
tctttgccagtgataccaacagaggtggaatattctattcttgatgacctaaggaatcgt
gtacagttgagcaatgtagccttgccttcagtcagtttctatacatttctcaacactcat
aacgggttgaactgttcagcaatatcacatgatggatcattgcttgctggcggattttca
gattcgtcactgaaggtgtgggacatggcacttcttgggcagcaaactgacaattctatt
ttgccagaggaaaacgagtcagctcgtagtgcggctggaacaaattctgggaaaagatcg
tatacactatatcggggtcattccggtcccgtatattctgctgcatttagtccttttggg
gatttcctcctgtcatcttcatcagattcaacaattcggttgtggagcaccaagttaaat
gcaaatcttgtttgctacaagggtcataattacccagtatgggatgtcaagtttagtcct
gcaggacattattttgctagtgcctcgcatgatcgaactgcaagaatttggtcaatggac
agaatacagcctcttagaatcatggcagggcacttgtctgatgttgattgtgtgcaatgg
catgcgaattgcaactacattgcaaccggatcaagcgataagactgttcgcttatgggat
gtacagaatggagagtgtgtcaggattttcattggccataggagtatgatcttatctttg
gcaatgtcacctgatggtcgatatatggcatctggggatgaagatggaaccattatgatg
tgggatttgtctagcggtcgttgtgttactccattagtcggtcattctacctgtgtatgg
acacttgattacagttgtgagggttcacttcttgcatccggttctgctgattgcactgta
aaactctgggatgtgacgtcgagtacagcaagggtgccaaaatcagaagagaacaaaacc
ggaagtactacaaacaggcttagatccctcaagaccctgcctacgaaatctacaccagtc
catgcattgaagttttctcgaagaaatctcctctttgctgctggacctatatctgcaaat
gggtcaacttattga
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