Daucus carota (carrot): 108219669
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Entry
108219669 CDS
T05350
Name
(RefSeq) WD-40 repeat-containing protein MSI4 isoform X2
KO
K10752
histone-binding protein RBBP4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108219669
03083 Polycomb repressive complex
108219669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108219669
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
108219669
Histone modification proteins
HAT complexes
HATB complex
108219669
HDAC complexes
Sin3A-HDAC complex
108219669
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108219669
PRC2.2
108219669
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
108219669
Heterochromatin formation proteins
Other heterochromatin formation proteins
108219669
Chromatin remodeling factors
NuRD complex
108219669
NuRF complex
108219669
NuRF complex (fruit fly)
108219669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
108219669
NCBI-ProteinID:
XP_017248648
UniProt:
A0AAF0WZU7
LinkDB
All DBs
Position
5:843034..856318
Genome browser
AA seq
453 aa
AA seq
DB search
MKMDVDNKKEEGTVEERYTQWKSLIPVLYDWLANHNLVWPSLSCRWGPVTEQATYKNRQR
LYLSEQTDGTVPNTLVIANCEIVKPRVAAAEHISLFNEESRSPFIKKFKTILHPGEVNRI
RELPQNSNIVATHTDSPDVLIWDIESQPSRQATLGHPVSRPDLILTGHKDNAEFALAMSP
TEPFVLSGGKDRSVILWSIHDHISTLATDSGSTKSAKPGGIKNSKGNGSDDSPSSSPSVQ
ARGTFQGHENTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGFSPAVKVEKAHDADLHCV
DWNPYDVNLILTGSADNSVRMFDRRNLTSGPIHIFAAHSEAVLCVQWSPDSSSVFGSSAE
DGILNIWDHKQIGQKDNPNGLFFRHAGHRDKVVDFHFNSSDPWTIVSVSDDCESTNGGGT
LQIWRMLDLLYKSEEEALAELEKFKGHLLSCPM
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggacgttgataacaaaaaggaggagggaacagtggaggagcgctacactcag
tggaaatcactcattcccgttctttacgactggctcgctaatcacaatctcgtttggccc
tctctttcttgccggtggggtccggtgactgagcaggctacttacaagaaccgtcagcga
ctttacctgtcagaacagaccgacggtactgtccctaatacacttgttattgcaaactgt
gaaattgtaaaacccagggttgctgccgcagaacacatatcactgttcaatgaagagtcg
cgttccccatttataaaaaagtttaagaccattttacatcctggcgaggtgaatcggatt
agagaacttcctcagaacagcaacatagtggctacacacactgacagtcctgatgtcctt
atttgggatattgaaagtcaacctagtcgtcaagctaccctggggcaccctgtgtctaga
ccagatttgatactgaccggacataaagataatgcagaatttgcacttgctatgtctccg
acagaacccttcgtgctttctggaggaaaggacaggtcggtcatactctggagtatacat
gatcacatctctactttggctacagactcaggatctacaaaatctgctaaaccgggggga
atcaagaactccaagggtaatggaagtgatgactcaccatcatctagcccttccgtacaa
gctcgtgggactttccaagggcatgaaaatactgtcgaagatgtgcaattctgtccctca
agtgcacaggagttctgcagtgtaggggatgattcctgccttatcttgtgggatgcaaga
agtggtttttctccagctgtcaaggttgaaaaagctcacgatgctgatctgcactgcgtg
gattggaacccttatgacgtaaatttaatactgactgggtctgctgataattctgttcgc
atgtttgatcgtcgtaacctcacttcagggcctatacacatatttgcggctcacagtgaa
gctgtcctttgtgttcagtggtctccagatagttcatctgtcttcgggagttctgcagaa
gatggcattctgaacatttgggatcataagcagattggccagaaagataatccaaatggc
ctatttttccgacatgctgggcacagagacaaagttgttgactttcacttcaattcttct
gatccttggacgattgttagtgtctctgatgattgtgaaagcactaatgggggtggaacg
ctgcagatatggaggatgcttgatctattgtacaaatctgaagaggaggcccttgcggag
ctggagaaattcaagggccatttgctttcgtgtccaatgtaa
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