Daucus carota (carrot): 108219682
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Entry
108219682 CDS
T05350
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108219682
03015 mRNA surveillance pathway
108219682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108219682
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108219682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108219682
NCBI-ProteinID:
XP_063950376
LinkDB
All DBs
Position
5:7876301..7882322
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AA seq
385 aa
AA seq
DB search
MAKAGRARSPSGSASSSRSRSFSGSDSRSSSRSRSRSRSRSFSSSSSRSRSLSSRSPTPR
KSPVEGAKRGRSPPPQSKNETALPPPPPRKASPVPESLKLCIRQLTRNVNENHLREIFGN
FGEVVSVRLEIDHRANLSKGLGYVEFKTRADAEKAQAYMDGAQIDGNYVQAKFTIPARTT
PPKAPVAARRDADAEKDGPKRQREPLSPPRRRSPVARRRSPRRDMDSSPRRRGSPIRRRM
NSPYRRGDSPPPRRRPASPFRGCSPSPPRRPSPSRIRGPVRRRSPPPRRRSPRRARSPPR
RSPIPRRRTRSPIRRPLRSRSRSISPRRGRAPPGRRGRSSSSSGSPGPRKVVRKISRSRS
PRRRGRSSSNSSSSSSPPPPRKPQP
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcaggacgagctcgatcaccttctggttcagcctcgtcgtctcggtcacgt
tcgttctcaggctcggactctcgctctagctcgcgctctcggtctcgttctcgctctcga
tctttctcttcctcttccagtcgctctcgcagtctcagctcccgcagtcctactccccgc
aaaagtcctgttgaaggtgctaaaagaggccgttcaccaccacctcaatcgaagaacgaa
actgcacttccacctcctcctccgaggaaagcttctcctgttcctgagtcacttaagctt
tgcattcgccagctcaccaggaacgtgaatgaaaatcatttaagagaaatatttggtaac
tttggtgaagttgtgagtgttagattggaaatagatcacagagcaaacctttcaaaagga
cttggttatgtggaattcaagacaagagctgatgctgaaaaagcccaggcatacatggac
ggggctcaaattgatggtaattatgttcaagctaagttcacaatacctgcacggacaaca
cctccaaaggcacctgttgctgcaagacgggatgctgatgctgaaaaagatggaccaaag
aggcagagagagccactttcacctccccgaaggaggtcacctgtggcgcggagaagatca
cctagaagagatatggattcatctccacggcgacgtggttcacctattcgtcgtcggatg
aactccccctatcggcgtggcgattcaccaccacctaggagaagaccagcatctccattt
agaggttgctcaccatctccaccaaggaggccctctccttcaagaattcgcggtcctgtt
cgaagacgttctccccctccaaggcgacgatcccctagacgtgctcgcagcccacccaga
agatctccaattcctcgtagacggacccgttcacctatccgtaggcctcttcgttcgcgt
tctagatcaatctccccacggagaggtagagctccgcctggcaggcggggaaggtcatca
tcctcctccggatctcctggcccacgcaaggttgtgcggaagatatcaaggagtcgtagt
cccaggaggagagggagaagtagtagcaacagcagtagcagcagttcaccacctccacct
cggaagccacaaccatag
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