Daucus carota (carrot): 108219740
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Entry
108219740 CDS
T05350
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108219740
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108219740
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Motif
Pfam:
Pectate_lyase_4
NosD
Beta_helix
Peptidase_C24
Motif
Other DBs
NCBI-GeneID:
108219740
NCBI-ProteinID:
XP_017248733
UniProt:
A0AAF1B271
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Position
5:complement(36375461..36379639)
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AA seq
428 aa
AA seq
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MEVLLKPLCIFLLFFIAKVVTESSGEEMIQVQSSSNTTLRAYKHEHAVDDPESVATMVNM
AIRNSTERRKLGFFSCGTGNPIDDCWRCDRNWERNRKRLANCAIGFGRSAIGGRDGKYYV
VSNPNDDDPVNPRPGTLRHAVIQDRPLWIVFRRSMVITLKQELIMNSFKTIDARGHSVHI
ANGACITIQYVTNIIIHGLNIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWI
DHNSLSKCTDGLIDAIMGSTAITISNNYFTHHNEVILLGHSDSYWRDKAMQVTIAFNHFG
EGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPSNPFAKEVTKRV
DLRTHRWRHWNWRSEGDLMLNGAYFTSSGAGAAASYARASSLGAKSSSLVGSLTSHSGVL
LCRIGRQC
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcttgttgaaacctctctgcatttttctgctcttcttcattgccaaagttgta
acggaatcaagtggggaagaaatgattcaggtgcagagctcaagtaacacgacattgcgt
gcctacaagcatgagcatgcagtggatgatccggaatcagttgcaaccatggttaatatg
gcaattaggaatagcactgaaaggagaaaactaggtttcttctcttgtgggacagggaac
cctattgatgactgttggcgctgtgaccgcaactgggaacgcaaccgcaaacgccttgcc
aactgtgccattggctttggacgcagtgctattggcggccgtgatggcaagtactatgtg
gtttcaaacccaaacgatgacgaccctgtaaatcccagaccaggcacgctacgtcatgct
gtaatccaagacaggcccttatggattgtttttagacgaagcatggtgatcacactaaaa
caagagctgatcatgaatagctttaaaactattgatgcccgaggacattctgtgcatatt
gcaaatggggcttgcattacgattcagtatgtgaccaatattattattcatggtctcaac
atccatgattgcaaacgaactggcaatgccatggtcaggagctcaccaagtcattatggt
tggagaacaatggctgatggtgacggtatctccattttcggatcaagtcacatttggatt
gatcacaattctctttctaaatgtaccgatggcctgattgatgctataatgggatcaact
gccattacaatatccaacaattactttactcaccacaatgaggtgatactattaggccac
agcgactcatactggagagataaggctatgcaagtgacaattgctttcaatcatttcgga
gagggtcttatccagagaatgccaaggtgtaggcacggatactttcatgtggtgaacaat
gactacacccactgggaaatgtatgccatcggaggcagtgctgatcccacaataaacagc
cagggaaatagatatctcgccccatcaaacccttttgctaaagaggtgaccaagagagtt
gatctccgtacacacaggtggaggcactggaactggagatcagaaggagacctgatgctg
aatggagcttattttacctcatctggtgctggagccgcagcaagttatgccagggcctcg
agtttaggagcaaagtcctcttccttggtcggatctctcacgtctcattctggtgtgctt
ctctgtcgtataggccgccagtgttaa
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