Daucus carota (carrot): 108219922
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Entry
108219922 CDS
T05350
Name
(RefSeq) tRNase Z TRZ2, chloroplastic
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108219922
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
108219922
Transfer RNA biogenesis [BR:
dcr03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
108219922
Prokaryotic type
108219922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B
PDEase_II
zf-C2H2_ZN142
Motif
Other DBs
NCBI-GeneID:
108219922
NCBI-ProteinID:
XP_017249008
LinkDB
All DBs
Position
5:46711838..46760352
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AA seq
450 aa
AA seq
DB search
MLRVTTRYPTRQHPQIGLHTPSKTSLKPTLQNPRFYTHNYTYINTSTHMYASNPSCSLPQ
LCKALTFSSSCLQFHQPNSLFPSKPSKIIKTPVLITQNNEGVVKIQALIGSGFLPAIEEK
PSKNIKTHVQNNGRVVKIEALKGSGFLSAIGNAIEEEEEYRKARAEVNRKGADLGGYSVE
GLSVGGHETCVIVPELKSAFDIGRCPPKAVHQNFLFITHAHLDHIGGLPMYLATRGLYNL
KPPTVFVPPCIKDDVEKLIDIHRVLGQVELNLELVALDIGETYEMRNDLVVRPFKTHHVI
PSQGYVIYSVRKKLKKQYMHLNGKQIEKLKKSGVEITDTILSPDVAFTGDTTSDFFLDPR
SADALRANVLITEATFLNEDFSVEHARERGHTHIFEIMAHAKWIRNKTLLLTHFSPRYHI
EDIRQAVSKLQPKVSAKVIPLTEGFKSMHA
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgctccgagttactaccagatatccaacaagacaacatcctcaaattggattacacaca
ccttccaaaacctccctaaaacccactctccaaaatccaagattctacacacacaactac
acatatataaacacaagcacacacatgtacgcttcaaacccttcttgttctctaccacaa
ctatgcaaagctctcaccttttcatcctcatgcctccaattccaccaacccaattcactt
ttcccctcaaaaccaagtaaaatcatcaagacccctgttttaatcactcaaaacaatgaa
ggggttgtaaagattcaagctttaatagggtcaggctttttacctgcaattgaagaaaaa
ccaagcaagaacatcaagacccatgttcaaaacaatgggagggttgtaaagattgaagct
ttgaaagggtcaggctttttgtcagcaattgggaatgcaattgaagaggaagaggagtat
aggaaggctagagccgaggtgaataggaaaggtgctgacttgggggggtattcagtggaa
ggactgtctgttggagggcatgagacttgtgtgatagtgcctgagttgaagtcggctttc
gatatcggaaggtgtcctcctaaagctgttcatcagaatttcttgtttattactcatgct
catcttgaccatataggtggattaccaatgtatttagcaactcgtggcttgtacaactta
aaacctccgacggtgtttgttcctccctgcataaaagacgacgtagagaagttgattgat
atacatagggtcctgggtcaggtagaactgaaccttgagttggttgcgttggatataggt
gaaacatatgaaatgcggaatgaccttgttgtacgaccatttaaaactcaccatgtgatc
cccagtcagggttatgtcatctactcagttaggaagaagctgaaaaagcaatacatgcat
ttgaacggaaaacaaattgagaaacttaagaaatccggtgttgagatcacagataccata
ttgtctccggatgtggcttttacgggagatacaacgtctgacttcttccttgatcctcgc
agtgctgatgcattgagggcaaatgttcttataactgaggcaactttcttaaatgaagat
ttcagtgttgagcatgccagagagcgtggtcatactcatatatttgagataatggcccat
gcaaaatggatacgaaacaaaaccttgttgctaactcatttctctccccgctaccatatt
gaggacatccggcaagctgtatcaaaattgcaacctaaggtttcagctaaagttatccct
ctgacagaaggatttaaatcaatgcacgcataa
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