Daucus carota (carrot): 108220200
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Entry
108220200 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108220200 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108220200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dcr03000
]
108220200
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108220200
04121 Ubiquitin system [BR:
dcr04121
]
108220200
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108220200
Transcription factors [BR:
dcr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108220200
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108220200
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108220200
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108220200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
zf-RING_2
SET_assoc
FYVE
Motif
Other DBs
NCBI-GeneID:
108220200
NCBI-ProteinID:
XP_017249383
LinkDB
All DBs
Position
5:42042116..42049014
Genome browser
AA seq
909 aa
AA seq
DB search
MPAVLSLISLCTLILSALSLSFLSAVSLSRFSLREMTTIEQGKRCPLCAEEMDFTDQQLK
PCECGYQVCVWCWNQIMNMAEKDGTEGRCPACRTPYDKDKIAGMEANFERVEANTNRKHK
SLKGKSKTNEGKKDLSTARVIQRKMAYVIGLPLSLADVDCLMRKEFFGQYGKICKISLSR
RASGAIHQYVNDSCSVYITFSKEEEAVRCIQSVHGFVLDGRFLRASFGTAKYCHAWLRNM
PCNNSACLYLHTLGAEEDTFGRDEVAAVHTRSRVQQIVGVTHNLHRRSGSVLPPPEDEPF
TYSSASAEEPTVESDEKEISGDVEICSGHLTDSHLSKDKDEHNGAPNKGTAFVEVVGRPS
SSSIEKEGNVAEDRVVANLSLELSSVEIHEDSHVEAAYSDPMIHAAGLTSKKDMKEPYGE
PSISCGLGGKGTLNRACIRENSGPQSKGDKMKEVVSFGQEIPLYPPSYPLKASEFSSNHI
GQHGQSSNASDYSANLNTVHGNKDANLVFTCTNSLTDGYNENIFQSSAKSDRIYRSSKSF
SNEEIVEHLRRIDDVERIVGQNSTIDDAERNILSNIMSMSVIADDLATLHPSIVGSFNHP
DRRQGSSLNLYNNDQSMFSFGNQEDFANQIPGLGSSFTDGGQDSIKFPLPRGLEESKDRY
LCKPQYLSASSVEVPTPQGFPMPAQDVPGFRACERRDQVFHANSGSLMSRTNSFSNNHHQ
TPIGRSNNTSDVGIIDQAMMSVGRGNPPYGGSSNSGFDTRPNHASPSSGVDDEARVWLLN
LLMQQSTPANQDLEHPHTYMQQAPAAYQAPRYVGQIGDRCSWNDMFQQTGQIQQSTNTSS
YTPSQQEPDHGMYSNSYQPAVDGMRLRNEPGMAEVMSNERSGFNRYCSGYGDHIFQPSSG
DRYPRVFGM
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgtactctctctcatttctctctgcactctcattctctctgcactctctctc
tcgtttctctctgcagtctctctctctcgtttctctctgcgggaaatgacgactattgaa
caaggaaagaggtgtcctctttgtgctgaggagatggacttcacggatcagcagctaaag
ccgtgcgaatgtggttatcaggtgtgtgtttggtgttggaaccaaataatgaacatggct
gagaaagatgggacagaggggcgatgtcctgcttgccggacaccttatgacaaggacaaa
attgctgggatggaagcaaactttgaaagagttgaggccaatacaaatcgaaaacataaa
tcactaaagggaaagtcaaaaacaaatgaagggaagaaggacctatctactgccagggtg
attcagcgtaaaatggcatatgtgattggactcccccttagtctcgctgatgtagattgc
ttaatgcgcaaggaattctttggtcaatatggtaagatttgtaagatttccctatctcgg
agggcaagcggagcaatccaccaatatgttaatgacagttgtagcgtatatattactttc
tcaaaggaggaggaagctgtgcggtgcattcaatctgtacatggatttgtgctggatggc
agatttttaagagcttcttttggaactgcaaagtactgccatgcatggttgagaaatatg
ccttgcaacaattcagcatgcttatacttgcatactcttggtgctgaagaagatactttt
ggtagggatgaagtagctgctgttcatacaaggagtagggtccaacaaattgttggtgta
acgcataatttgcataggcgttccggaagtgttttacctcctccagaagatgaacctttt
acttacagtagtgcttctgctgaggagccaactgtggaaagtgatgaaaaggaaatatct
ggggatgtggaaatttgcagtggacacttgactgattcacatttatctaaagataaagat
gaacacaatggagcacctaacaaaggtacagctttcgtggaagttgttggaaggccatcc
agttccagtatagaaaaggagggaaatgtggctgaagatagagtggttgcaaacttaagc
ttagagttgtcttccgtagaaattcacgaagacagtcatgttgaggctgcatattcagat
ccaatgatacatgccgctggactcacaagtaaaaaagatatgaaggagccatatggtgaa
ccttcaattagttgcggcttaggaggtaaaggaactttaaatcgtgcatgtataagagag
aactctggaccgcagtcaaaaggtgacaaaatgaaagaagttgtaagttttggtcaggaa
attccattatatcctccatcttatcctttaaaggcttcagaattttctagtaaccatatt
gggcaacatggacaatcttctaatgcaagtgactatagtgccaacctcaacactgtgcat
ggtaacaaggatgcaaatttggtgtttacatgcacaaactcattgactgatggatacaat
gagaatatatttcaaagttctgctaaatcagataggatatatagaagctctaaatcattt
tccaatgaagaaatagtggagcatttgagaagaatagatgacgtcgaaagaattgttggt
cagaattctacaatagatgatgcagagaggaatatactttcaaatatcatgtcaatgagt
gtaattgctgatgatctggcgaccttgcatcctagtatcgttggatcgtttaatcaccct
gacaggcggcaaggctcttcattgaacctttataacaatgaccaatcaatgttctcattt
ggaaaccaagaggactttgccaatcaaatccctggtctgggatcatctttcactgatggt
ggtcaggactcgataaaatttccattgcctcggggtttagaggaaagcaaggaccgctac
ttatgtaagcctcagtatctttcagcatccagtgtcgaagtaccaactccccaaggattc
cccatgccagcgcaagacgtaccagggtttcgtgcatgtgagagaagggatcaggttttc
catgccaactctgggagtctcatgtccaggacgaattctttctcaaataatcatcaccaa
acaccaataggacgcagcaacaacaccagtgatgttggtataattgatcaggccatgatg
tctgttggtagaggtaatccaccatatggtggatcaagcaactcaggttttgatacaagg
ccaaatcatgcttcaccatcaagtggtgttgatgacgaggcaagagtttggcttctgaat
cttttgatgcaacaatctactcctgcaaatcaggatctggaacatccacatacttacatg
caacaggctccagctgcatatcaagcaccaagatatgttggtcaaattggagatcgctgt
tcttggaatgacatgttccaacaaactggtcagattcagcagtcaactaatacatcatcc
tacaccccatcacagcaagaacccgaccatggcatgtactcgaatagctatcagccagct
gtggatgggatgcgattaagaaatgaaccgggtatggcagaagtaatgagcaatgagaga
tcaggttttaacaggtactgttcaggttatggagatcatattttccagcccagttcagga
gatcgttatcccagagtatttgggatgtaa
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