Daucus carota (carrot): 108220464
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Entry
108220464 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108220464
KO
K12589
exosome complex component RRP42
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108220464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108220464
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108220464
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
108220464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
108220464
NCBI-ProteinID:
XP_017249731
LinkDB
All DBs
Position
5:46366666..46369736
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AA seq
286 aa
AA seq
DB search
MVGLSIGEKHFIEGGVAQDIRTDGRRRLVYRPIQLQTGVIPQANGSARVRMGGTEVIASV
KAELGRPSSLQPDKGKVFINVDCSPTADPIFEGRGGEELSTELSGALQICLLGGKSGAGA
AIDLSSLSIVGGKICWDLYIDGLVVSADGNLLDALGAAIKAALSNTGIPKVNVAAGASSD
EQPEVDISDEEFLQFDTSAVPVIITLTEVGRHYIVDATPEEESHMNSAISMSVNRKGNIC
GLTKRGSAGLDPSVILDMISVGIHVSEQLMNKLDSEIAAAEACEEE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggtagggctttcaattggagaaaagcacttcatagaaggtggagtagctcaagatatt
cgaactgatggccggagaagacttgtttacaggccaattcagcttcagactggggttatt
cctcaagctaatggctcagctagagttagaatgggtggcactgaagttatagctagtgtt
aaggcggagctgggaaggccgagttctttgcagccggataaaggcaaagtttttatcaat
gtggattgtagccctacagctgatccaatatttgagggcagaggcggtgaggaattatct
acagaactttcaggtgctcttcagatatgtcttcttggtggaaaaagtggcgcaggagct
gcaattgacctttcctctctgtcaattgtgggaggaaaaatctgttgggacctttatatc
gatggtttagtagttagtgcagatgggaacctgttagatgcgcttggtgctgctattaag
gctgcactgagcaatacaggtattccgaaagtcaatgtggctgccggtgcctcttctgat
gagcagcctgaagttgacataagcgatgaagaatttttgcaattcgacacctctgctgtc
cccgtcattattactttaacagaggtcgggaggcattatattgtggatgcaactccggag
gaggaatcccatatgaattcggccatttcaatgtctgttaatagaaaaggaaatatttgc
ggactgacaaaacgaggtagtgcaggcctggacccaagtgttatacttgacatgatatct
gtaggtatacatgtaagtgagcagctgatgaacaagttagattcagagatagctgctgcg
gaagcatgtgaagaggaatag
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