Daucus carota (carrot): 108220487
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Entry
108220487 CDS
T05350
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1
KO
K28108
shortage in chiasmata 1
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108220487
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Meiosis-specific proteins
Others
108220487
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Other DBs
NCBI-GeneID:
108220487
NCBI-ProteinID:
XP_017249758
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Position
5:complement(32746978..32759680)
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AA seq
1671 aa
AA seq
DB search
MRTRFLGLDFFNSSALIETLDDFLRFPVPEIQPPPSTSTSGGENLFNCINTDDASILSLS
SQLQSVQIDTALSKFFDDVLPHRIEVDQSCFSRDCSDEKKTKALPEEVDTEKQINAGSDT
LEEESGTTVDGNGDDIFKILLFEMPVLDISLENVCTSQEQELKIFSEVSDVETSEDLVPM
LKMQDLCKIQESLFAVENISVDYQTDESDCLLEDSTSCKGQNHSCCGEFPLLEVDVSSLG
IFSSISMDNEIKLFESIEPQFWWAKDETPFEGKELLQFMELDIFEYLSCSSLSNQRLEID
TVCSDFIKEIDLRSVIEHEVMVEKVEKYLGRPENSYFPLRTPILFEEPQFFDLLSFHFFE
FISEIEALSEVKTIQQLFCEASKVNNFNDLIVSHELTLVDDSFKSLPVPMLSYSEENSLV
QEYLEEILAELKPLPSLASDAIYLDWHIIEEGKCSSSRYSSCLKVLEEVDGCADDINMKP
YDAGLLVLDSIFSDDNQHVQYRKEDKEMLKIPSFNTPFARVCQGETSSGALNDGCQKRVK
GESPRNLESDSVSRLIKSISECDNLESFLTSSKSTLTKNPLTSNTVPGGSASDSIADDTC
TTVPGGSASDSIAASEHWNIEIHQIRLSDNILALLHDLSKTYLGILDNDIVLGKRKYSCL
AADDYTLPTISNKKLMDWIKEIGTGTSLSNNDDNMEPLITLYAIKQMAWYLCYYGIHATY
LYIDNLHQKLQCSKFRLSFLRGLVLDAHEKVKKEIIRFHPSLLVIHGILKSSFRKNYKIL
IVAERVFWWTLEMLLNSMGISSINAQSFHTHTNELGSSYNITFVDTIMEAVVHSDSCLIS
LEHISPSFPFGKFNIILEYGGSYGSCRLSTISPGASGFPILHFLRMDVESSNAAKAFCEN
VDTPSRIGIRRDGPQCDRIIGENIQKLEELLNFVPANEYNMGSPRAANCFKPLSIPPSLP
CPQLDKETTQVFPSISSFPDKVVVVNTQSVDNEMIISRRSTYQKILAMEKEGTQVVERDL
HHPVDVIVNASVCLVWYDCRNIRKKASASNEASSSLPSCIEDIAANGLTALSFAFSGCIM
VFEGQSSFLGGVMESSDELYAAAASLGMDLQLFFSYSSEMTDEIILSCIIHASKFTRGLY
TTMPESETLAESFLTTFPSMNPLSAHAILSSVGVLIEFLESSHADRVRAVQKYQVSDESI
ALLNACFRYGEREDCKSGTTECSSSVSSAPDSDNCPTKSASEMRKRKYIQSALNVDLPVD
DLFHLDTSKLFAEARETPKRMSKPDNTWLSEAPDAFKEAAKSLSFENELFPRNPGSNINF
KPTSSRMSTPCGSYMSRSRVMSEERDNDALPVDDALFCQNQGLESSATNKFDRWNSMNSE
NFVQNFIGEVINIDDEHPEVEDSSAAIFPGLSYSNSDMERDPPPVFPRTARKLSFDNNCL
PTFSRAAEIDYDTDGFVSTSSDSQNLGGQQYLKKQVFQNSDKEMNVEETMLLDHHKYLLK
EDTLPKSVGSSYKHSLMENNMPHYGGTPLSNAIQFAQPHQGSPWTIEFLNRVREKSRLRQ
KSLPRDLCGPSFGYKGNISKVIKRRSPSILEFFKYEKGSNPSKRMEQKRQDRSAQPSSSY
KNEKSVPSFLPAMTPIDKRARQTLSFATPGSSGQSKLVWGEKSTHALKRQF
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacacgttttctcggcctcgatttcttcaactcctcagccttaatcgaaacccta
gatgatttcctccgctttccggtgccggaaattcaacctccgccgtcgacttcgacttca
ggcggtgagaatctcttcaattgtataaacacagatgatgcgtctattctcagcctctcc
tctcagctccagtccgtacagatcgacaccgctctctccaagttcttcgatgacgtgctt
cctcaccgcattgaggtggatcagtcctgtttttcgcgagattgttctgatgagaagaaa
acaaaagctcttcctgaagaggtggatacggaaaagcagattaatgctgggtctgatact
ttggaggaagaaagtgggactactgtggatggcaacggggatgacatttttaaaatccta
ctgtttgaaatgccagtgctagatatatcattggaaaatgtttgtacttcacaagaacaa
gagctaaagattttctcagaagtatcagatgttgaaactagtgaggatctagttcccatg
ctcaagatgcaagatttgtgcaagattcaggaatctctttttgcagtcgaaaatatttct
gtggattaccagacagatgaaagcgactgtctgttggaagacagcacttcgtgtaaagga
caaaatcattcttgctgcggtgagtttcctcttttagaagtggatgtctcaagtttggga
atattcagcagcatatccatggataatgaaattaaactatttgaaagcattgagcctcaa
ttttggtgggcaaaagacgagactccgtttgagggaaaggagctgctgcagttcatggag
ttggacatatttgagtatctttcgtgcagttctttatcaaaccagaggcttgaaatcgat
actgtctgttcagattttattaaagaaattgaccttcgcagtgttatagaacatgaagtt
atggtagaaaaggtggaaaaatatctagggagaccggagaattcctattttcccttgagg
accccaattctattcgaggagccccaatttttcgacctactgtcatttcattttttcgaa
ttcatttccgaaattgaagctttaagtgaagtaaaaactattcaacagctgttctgtgaa
gcttcgaaagtcaataactttaatgacttgattgtttctcacgagctcactcttgtagat
gactctttcaaatcattgcctgtgcctatgctttcatattcagaagagaatagtttggtt
caggagtatcttgaagaaatactagctgaattgaagccactaccatccttggcatctgat
gccatttacttagactggcatattatagaggagggaaaatgcagtagcagtagatattct
tcctgtctgaaagttctggaagaagtagatggttgtgctgatgatataaatatgaaacca
tatgatgctgggttacttgtcctagattcaattttttctgatgataatcaacacgtacaa
tacaggaaagaagacaaagaaatgttgaagataccttcttttaacacgccatttgctcgt
gtgtgtcaaggtgaaacctcaagcggagcactgaatgatggatgtcagaaaagggtgaag
ggagaatcaccacgcaaccttgagtctgacagcgtttccagactgattaaatccatttca
gagtgtgataatcttgaaagtttcttgacttcttcaaaatccactttaacaaaaaaccct
ttaacaagtaatacggtgcctgggggttcagcaagtgattcaattgcagatgatacctgt
actacggtgcctgggggttcagcaagtgattcaattgcagcatctgagcattggaatatc
gagattcatcaaattaggctgtctgataatattttggctctccttcatgacttgagtaaa
acttatctgggaatcttggataatgatatagtgctaggaaagagaaagtactcttgtcta
gctgcagatgactacactttgcccaccatttcaaacaaaaagttaatggactggataaaa
gaaataggtactggaacgtctttgtccaacaatgatgataatatggagccccttatcaca
ttgtatgcaattaaacagatggcgtggtacctatgttactatggtatacacgccacttat
ctgtacatcgataatttacaccaaaaattgcagtgctcgaaattcagattaagttttcta
cggggtctggtgttagatgcacatgagaaggtgaaaaaagaaattataagatttcatcca
tcacttctcgttatccatgggatcttgaaatccagtttcagaaaaaattataaaattttg
attgtggcagagcgagttttctggtggactttggaaatgttgttaaattcaatgggaata
tcaagcatcaatgcacagtcatttcacactcacacaaatgaacttggtagttcttataat
atcacgtttgtagataccataatggaggcagtggttcattccgatagctgtttgatatcc
cttgagcatatttccccatcatttccctttggaaaattcaatattattttggaatatgga
ggttcatatgggtcctgcagactatccaccatttcacctggcgccagcggttttcctata
cttcattttctcaggatggacgtggagagctcaaatgctgcaaaagccttttgcgaaaat
gtggacacaccaagtcgtattggaataagaagggatggacctcaatgtgatcggatcata
ggtgagaacattcagaagctggaagaactgctcaattttgtaccagctaatgagtacaac
atgggatctccaagagctgcaaattgtttcaaacctttatctatacctccgtcacttcca
tgtccgcaattagataaggaaactactcaagtttttccaagtatctcatcttttcctgac
aaagttgtagttgtaaacacacaaagtgttgataatgaaatgataatttcgaggaggagc
acataccagaaaattcttgcaatggagaaagaagggacacaggttgttgagcgtgattta
catcaccctgtggatgttattgtcaatgcttctgtttgccttgtgtggtatgattgcaga
aacattcggaagaaagcttctgcttcaaatgaggcttcttcgtccttaccttcatgtatt
gaggatattgcagcaaatggtctgactgctcttagttttgcattcagtggctgcattatg
gtctttgaaggacaaagcagtttccttggtggagtaatggaatcatcagatgaactatat
gctgcagcagctagcctggggatggatttgcagctcttcttctcatactcatctgagatg
accgatgagattattttgagttgcattatccatgcatcaaagttcaccagaggcctttat
actacaatgcctgaatcagaaactttggcagaatcatttttgaccacatttccttcaatg
aatccactttcagctcatgcaatactgtcttctgttggtgtgcttattgaatttctagaa
tcgtcgcacgcagatagggttcgtgctgttcaaaagtaccaggtctctgatgaaagcatt
gctttgctgaatgcatgtttcaggtatggtgagcgtgaagattgtaaatctggaacaaca
gaatgctcgtcctctgtatcatctgctcctgattctgacaattgtccaactaaaagtgct
tctgaaatgaggaaaaggaaatacatccagagtgctctaaatgttgacctacccgtggat
gacttgtttcaccttgatacatcaaagctatttgcagaagccagagagactccaaaaaga
atgtctaagccagataatacctggttatcagaagctcctgatgctttcaaagaagccgca
aagtctttgtcatttgaaaatgagttgtttcctcgaaatccaggatcaaatataaatttt
aaaccaacttcctctcggatgtctacgccatgtggttcttatatgtcaagaagtcgtgta
atgtctgaggagagagataatgatgcgttacctgttgatgatgcattgttctgccaaaac
cagggactggaaagtagtgcaacaaataaatttgataggtggaacagcatgaactcagaa
aattttgttcagaacttcataggtgaggttatcaacattgatgatgaacacccggaagtt
gaggactcctcagcagcaatcttcccaggtctctcatattctaactctgacatggaaagg
gacccccctccagtgtttcctagaactgcaagaaaattgtcattcgacaataattgttta
cctaccttttcaagagctgctgagatcgactatgacacagatggctttgtttccacaagc
agtgatagtcaaaatttaggaggacaacaatacttaaagaaacaagtctttcaaaattca
gacaaagagatgaacgttgaggaaacaatgcttctggatcaccataagtatctactgaag
gaggatacattgccaaaatcagttggaagttcttacaagcattcactcatggagaataat
atgccgcattatggaggtacaccactatcaaatgccatccaatttgctcaaccgcaccaa
ggatctccctggacaatagaatttcttaacagagtccgggagaagagcagattgcgtcaa
aaatctctccctcgtgatctatgtggtccttcatttggatacaaaggaaacatatccaag
gtgatcaaacgaagaagtccttctatcctagaatttttcaagtatgagaaggggagcaac
cctagtaaaagaatggaacaaaagaggcaagatcgttctgcacaaccatcaagttcatac
aaaaatgaaaaaagtgtaccctcctttcttccagcaatgacacccatcgataagagagca
agacagactctatcttttgcaacacctggaagcagtggacagagtaagctggtgtggggt
gaaaagagtactcatgcactcaaaagacagttctag
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integrated database retrieval system