KEGG   Daucus carota (carrot): 108220487
Entry
108220487         CDS       T05350                                 
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1
  KO
K28108  shortage in chiasmata 1
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dcr03036]
    108220487
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    108220487
SSDB
Other DBs
NCBI-GeneID: 108220487
NCBI-ProteinID: XP_017249758
LinkDB
Position
5:complement(32746978..32759680)
AA seq 1671 aa
MRTRFLGLDFFNSSALIETLDDFLRFPVPEIQPPPSTSTSGGENLFNCINTDDASILSLS
SQLQSVQIDTALSKFFDDVLPHRIEVDQSCFSRDCSDEKKTKALPEEVDTEKQINAGSDT
LEEESGTTVDGNGDDIFKILLFEMPVLDISLENVCTSQEQELKIFSEVSDVETSEDLVPM
LKMQDLCKIQESLFAVENISVDYQTDESDCLLEDSTSCKGQNHSCCGEFPLLEVDVSSLG
IFSSISMDNEIKLFESIEPQFWWAKDETPFEGKELLQFMELDIFEYLSCSSLSNQRLEID
TVCSDFIKEIDLRSVIEHEVMVEKVEKYLGRPENSYFPLRTPILFEEPQFFDLLSFHFFE
FISEIEALSEVKTIQQLFCEASKVNNFNDLIVSHELTLVDDSFKSLPVPMLSYSEENSLV
QEYLEEILAELKPLPSLASDAIYLDWHIIEEGKCSSSRYSSCLKVLEEVDGCADDINMKP
YDAGLLVLDSIFSDDNQHVQYRKEDKEMLKIPSFNTPFARVCQGETSSGALNDGCQKRVK
GESPRNLESDSVSRLIKSISECDNLESFLTSSKSTLTKNPLTSNTVPGGSASDSIADDTC
TTVPGGSASDSIAASEHWNIEIHQIRLSDNILALLHDLSKTYLGILDNDIVLGKRKYSCL
AADDYTLPTISNKKLMDWIKEIGTGTSLSNNDDNMEPLITLYAIKQMAWYLCYYGIHATY
LYIDNLHQKLQCSKFRLSFLRGLVLDAHEKVKKEIIRFHPSLLVIHGILKSSFRKNYKIL
IVAERVFWWTLEMLLNSMGISSINAQSFHTHTNELGSSYNITFVDTIMEAVVHSDSCLIS
LEHISPSFPFGKFNIILEYGGSYGSCRLSTISPGASGFPILHFLRMDVESSNAAKAFCEN
VDTPSRIGIRRDGPQCDRIIGENIQKLEELLNFVPANEYNMGSPRAANCFKPLSIPPSLP
CPQLDKETTQVFPSISSFPDKVVVVNTQSVDNEMIISRRSTYQKILAMEKEGTQVVERDL
HHPVDVIVNASVCLVWYDCRNIRKKASASNEASSSLPSCIEDIAANGLTALSFAFSGCIM
VFEGQSSFLGGVMESSDELYAAAASLGMDLQLFFSYSSEMTDEIILSCIIHASKFTRGLY
TTMPESETLAESFLTTFPSMNPLSAHAILSSVGVLIEFLESSHADRVRAVQKYQVSDESI
ALLNACFRYGEREDCKSGTTECSSSVSSAPDSDNCPTKSASEMRKRKYIQSALNVDLPVD
DLFHLDTSKLFAEARETPKRMSKPDNTWLSEAPDAFKEAAKSLSFENELFPRNPGSNINF
KPTSSRMSTPCGSYMSRSRVMSEERDNDALPVDDALFCQNQGLESSATNKFDRWNSMNSE
NFVQNFIGEVINIDDEHPEVEDSSAAIFPGLSYSNSDMERDPPPVFPRTARKLSFDNNCL
PTFSRAAEIDYDTDGFVSTSSDSQNLGGQQYLKKQVFQNSDKEMNVEETMLLDHHKYLLK
EDTLPKSVGSSYKHSLMENNMPHYGGTPLSNAIQFAQPHQGSPWTIEFLNRVREKSRLRQ
KSLPRDLCGPSFGYKGNISKVIKRRSPSILEFFKYEKGSNPSKRMEQKRQDRSAQPSSSY
KNEKSVPSFLPAMTPIDKRARQTLSFATPGSSGQSKLVWGEKSTHALKRQF
NT seq 5016 nt   +upstreamnt  +downstreamnt
atgcgaacacgttttctcggcctcgatttcttcaactcctcagccttaatcgaaacccta
gatgatttcctccgctttccggtgccggaaattcaacctccgccgtcgacttcgacttca
ggcggtgagaatctcttcaattgtataaacacagatgatgcgtctattctcagcctctcc
tctcagctccagtccgtacagatcgacaccgctctctccaagttcttcgatgacgtgctt
cctcaccgcattgaggtggatcagtcctgtttttcgcgagattgttctgatgagaagaaa
acaaaagctcttcctgaagaggtggatacggaaaagcagattaatgctgggtctgatact
ttggaggaagaaagtgggactactgtggatggcaacggggatgacatttttaaaatccta
ctgtttgaaatgccagtgctagatatatcattggaaaatgtttgtacttcacaagaacaa
gagctaaagattttctcagaagtatcagatgttgaaactagtgaggatctagttcccatg
ctcaagatgcaagatttgtgcaagattcaggaatctctttttgcagtcgaaaatatttct
gtggattaccagacagatgaaagcgactgtctgttggaagacagcacttcgtgtaaagga
caaaatcattcttgctgcggtgagtttcctcttttagaagtggatgtctcaagtttggga
atattcagcagcatatccatggataatgaaattaaactatttgaaagcattgagcctcaa
ttttggtgggcaaaagacgagactccgtttgagggaaaggagctgctgcagttcatggag
ttggacatatttgagtatctttcgtgcagttctttatcaaaccagaggcttgaaatcgat
actgtctgttcagattttattaaagaaattgaccttcgcagtgttatagaacatgaagtt
atggtagaaaaggtggaaaaatatctagggagaccggagaattcctattttcccttgagg
accccaattctattcgaggagccccaatttttcgacctactgtcatttcattttttcgaa
ttcatttccgaaattgaagctttaagtgaagtaaaaactattcaacagctgttctgtgaa
gcttcgaaagtcaataactttaatgacttgattgtttctcacgagctcactcttgtagat
gactctttcaaatcattgcctgtgcctatgctttcatattcagaagagaatagtttggtt
caggagtatcttgaagaaatactagctgaattgaagccactaccatccttggcatctgat
gccatttacttagactggcatattatagaggagggaaaatgcagtagcagtagatattct
tcctgtctgaaagttctggaagaagtagatggttgtgctgatgatataaatatgaaacca
tatgatgctgggttacttgtcctagattcaattttttctgatgataatcaacacgtacaa
tacaggaaagaagacaaagaaatgttgaagataccttcttttaacacgccatttgctcgt
gtgtgtcaaggtgaaacctcaagcggagcactgaatgatggatgtcagaaaagggtgaag
ggagaatcaccacgcaaccttgagtctgacagcgtttccagactgattaaatccatttca
gagtgtgataatcttgaaagtttcttgacttcttcaaaatccactttaacaaaaaaccct
ttaacaagtaatacggtgcctgggggttcagcaagtgattcaattgcagatgatacctgt
actacggtgcctgggggttcagcaagtgattcaattgcagcatctgagcattggaatatc
gagattcatcaaattaggctgtctgataatattttggctctccttcatgacttgagtaaa
acttatctgggaatcttggataatgatatagtgctaggaaagagaaagtactcttgtcta
gctgcagatgactacactttgcccaccatttcaaacaaaaagttaatggactggataaaa
gaaataggtactggaacgtctttgtccaacaatgatgataatatggagccccttatcaca
ttgtatgcaattaaacagatggcgtggtacctatgttactatggtatacacgccacttat
ctgtacatcgataatttacaccaaaaattgcagtgctcgaaattcagattaagttttcta
cggggtctggtgttagatgcacatgagaaggtgaaaaaagaaattataagatttcatcca
tcacttctcgttatccatgggatcttgaaatccagtttcagaaaaaattataaaattttg
attgtggcagagcgagttttctggtggactttggaaatgttgttaaattcaatgggaata
tcaagcatcaatgcacagtcatttcacactcacacaaatgaacttggtagttcttataat
atcacgtttgtagataccataatggaggcagtggttcattccgatagctgtttgatatcc
cttgagcatatttccccatcatttccctttggaaaattcaatattattttggaatatgga
ggttcatatgggtcctgcagactatccaccatttcacctggcgccagcggttttcctata
cttcattttctcaggatggacgtggagagctcaaatgctgcaaaagccttttgcgaaaat
gtggacacaccaagtcgtattggaataagaagggatggacctcaatgtgatcggatcata
ggtgagaacattcagaagctggaagaactgctcaattttgtaccagctaatgagtacaac
atgggatctccaagagctgcaaattgtttcaaacctttatctatacctccgtcacttcca
tgtccgcaattagataaggaaactactcaagtttttccaagtatctcatcttttcctgac
aaagttgtagttgtaaacacacaaagtgttgataatgaaatgataatttcgaggaggagc
acataccagaaaattcttgcaatggagaaagaagggacacaggttgttgagcgtgattta
catcaccctgtggatgttattgtcaatgcttctgtttgccttgtgtggtatgattgcaga
aacattcggaagaaagcttctgcttcaaatgaggcttcttcgtccttaccttcatgtatt
gaggatattgcagcaaatggtctgactgctcttagttttgcattcagtggctgcattatg
gtctttgaaggacaaagcagtttccttggtggagtaatggaatcatcagatgaactatat
gctgcagcagctagcctggggatggatttgcagctcttcttctcatactcatctgagatg
accgatgagattattttgagttgcattatccatgcatcaaagttcaccagaggcctttat
actacaatgcctgaatcagaaactttggcagaatcatttttgaccacatttccttcaatg
aatccactttcagctcatgcaatactgtcttctgttggtgtgcttattgaatttctagaa
tcgtcgcacgcagatagggttcgtgctgttcaaaagtaccaggtctctgatgaaagcatt
gctttgctgaatgcatgtttcaggtatggtgagcgtgaagattgtaaatctggaacaaca
gaatgctcgtcctctgtatcatctgctcctgattctgacaattgtccaactaaaagtgct
tctgaaatgaggaaaaggaaatacatccagagtgctctaaatgttgacctacccgtggat
gacttgtttcaccttgatacatcaaagctatttgcagaagccagagagactccaaaaaga
atgtctaagccagataatacctggttatcagaagctcctgatgctttcaaagaagccgca
aagtctttgtcatttgaaaatgagttgtttcctcgaaatccaggatcaaatataaatttt
aaaccaacttcctctcggatgtctacgccatgtggttcttatatgtcaagaagtcgtgta
atgtctgaggagagagataatgatgcgttacctgttgatgatgcattgttctgccaaaac
cagggactggaaagtagtgcaacaaataaatttgataggtggaacagcatgaactcagaa
aattttgttcagaacttcataggtgaggttatcaacattgatgatgaacacccggaagtt
gaggactcctcagcagcaatcttcccaggtctctcatattctaactctgacatggaaagg
gacccccctccagtgtttcctagaactgcaagaaaattgtcattcgacaataattgttta
cctaccttttcaagagctgctgagatcgactatgacacagatggctttgtttccacaagc
agtgatagtcaaaatttaggaggacaacaatacttaaagaaacaagtctttcaaaattca
gacaaagagatgaacgttgaggaaacaatgcttctggatcaccataagtatctactgaag
gaggatacattgccaaaatcagttggaagttcttacaagcattcactcatggagaataat
atgccgcattatggaggtacaccactatcaaatgccatccaatttgctcaaccgcaccaa
ggatctccctggacaatagaatttcttaacagagtccgggagaagagcagattgcgtcaa
aaatctctccctcgtgatctatgtggtccttcatttggatacaaaggaaacatatccaag
gtgatcaaacgaagaagtccttctatcctagaatttttcaagtatgagaaggggagcaac
cctagtaaaagaatggaacaaaagaggcaagatcgttctgcacaaccatcaagttcatac
aaaaatgaaaaaagtgtaccctcctttcttccagcaatgacacccatcgataagagagca
agacagactctatcttttgcaacacctggaagcagtggacagagtaagctggtgtggggt
gaaaagagtactcatgcactcaaaagacagttctag

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