Daucus carota (carrot): 108220533
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Entry
108220533 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108220533
KO
K11097
small nuclear ribonucleoprotein E
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108220533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108220533
03041 Spliceosome [BR:
dcr03041
]
108220533
03032 DNA replication proteins [BR:
dcr03032
]
108220533
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
108220533
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
Sm proteins
108220533
U2 snRNP components
108220533
Complex B
U1 snRNP components
108220533
U4/U6.U5 tri-snRNP components
108220533
Complex C
U2 snRNP components
108220533
DNA replication proteins [BR:
dcr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
108220533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
108220533
NCBI-ProteinID:
XP_017249820
UniProt:
A0AAF0X3L7
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All DBs
Position
5:30639127..30641067
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AA seq
88 aa
AA seq
DB search
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
SIKKKSRKSLGRILLKGDNITLMMNTGK
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaccaaagtccagaggattatgacccaacctattaatctgatttttaggttt
ctgcaaagcaaagcgcgcattcagatatggctttttgagcagaaggatttgaggatcgaa
ggcagaattatcgggtttgacgagtacatgaatttggtcctcgatgatgctgaagaagtg
agtatcaagaagaaaagcagaaaatcgcttgggaggattttactcaaaggagacaacatt
acattgatgatgaacacgggtaaatga
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