KEGG   Daucus carota (carrot): 108220544
Entry
108220544         CDS       T05350                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03030  DNA replication
dcr03410  Base excision repair
dcr03420  Nucleotide excision repair
dcr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108220544
   03410 Base excision repair
    108220544
   03420 Nucleotide excision repair
    108220544
   03430 Mismatch repair
    108220544
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dcr03032]
    108220544
   03036 Chromosome and associated proteins [BR:dcr03036]
    108220544
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108220544
DNA replication proteins [BR:dcr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108220544
  DNA Replication Termination Factors
   ELG1-RFC complex
    108220544
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108220544
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108220544
  Check point factors
   HRAD17(Rad24)-RFC complex
    108220544
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Mg_chelatase AAA_14 AAA_22 AAA_16 Viral_helicase1 Rad17 AAA_24 RuvB_N AAA_11 nSTAND3 RCF1-5-like_lid AAA_5 AAA_assoc_2 ABC_tran AAA_25 AAA_19 MeaB IstB_IS21 AAA_28 DNAX_ATPase_lid AAA_30 bpMoxR AAA_18 NTPase_1 AAA_7 DO-GTPase1 RNA_helicase AAA_3
Other DBs
NCBI-GeneID: 108220544
NCBI-ProteinID: XP_017249835
UniProt: A0A164ZGD1
LinkDB
Position
5:41951523..41954116
AA seq 334 aa
MASSSSASMISQGYEMPWVEKFRPSKVCDIVGNEDAVSRLQVIARDGNMHNLILAGPPGT
GKTTSILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIIL
DEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILG
RLMVVVAAEKVPYIPEGLEAIIFTADGDMRQALNNLQATFSGFQFVNQENVFKVCDQPHP
LHVKNMIRNILEGKFDDACSGLKSLYDLGYSPTDIITTLFRIIKNYDMPEYLKLEFMKET
GFAHMRICDGVGSYLQLCGLLAKFALVRETAKAA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggcgtcgtcgtcgtcagcatcgatgataagccaggggtatgaaatgccatgggtggag
aagttcagaccttccaaagtctgcgatattgtcggcaatgaagacgccgtttccaggctt
caagtcatcgctcgtgatggcaacatgcataatctcatcttagctggacctcctggaact
ggtaaaaccaccagtatactggctcttgcacatgagctcttgggaccaaactgcaaggag
ggagtgttggaactcaatgcatcagatgacaggggaattgatgttgtgagaaacaagatt
aagatgtttgcgcaaaagaaggtcactctacctcctgggcggcacaagattatcattttg
gacgaagctgacagcatgacatctggagcacaacaagccttaaggaggacgatggagata
tattcgaactccacacggtttgctcttgcttgcaacacttcctcaaagatcattgagcct
attcagagtagatgtgcccttgtaaggttttcaagattatcagatcaagagatccttgga
cgtctcatggtggtggttgcagcagaaaaggttccttacattccagaaggccttgaagct
attatattcactgctgatggtgatatgagacaggcattgaataacttgcaagcaacattt
agtggatttcagttcgtgaaccaagaaaatgtgtttaaggtctgtgaccagcctcatccc
ctgcatgtaaagaacatgatccgcaatattctcgagggaaaattcgatgatgcctgttct
ggtctaaagagtctctacgatctcggctattcgcccactgacatcatcacaacgcttttc
cgaatcataaagaactatgatatgccagaatacctgaaattggaatttatgaaggaaact
ggttttgcccatatgagaatctgcgatggagttggttcatatcttcaactttgtggtcta
ttggctaagtttgcattggtccgggagacagccaaagctgcataa

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