KEGG   Daucus carota (carrot): 108220608
Entry
108220608         CDS       T05350                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03030  DNA replication
dcr03410  Base excision repair
dcr03420  Nucleotide excision repair
dcr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108220608
   03410 Base excision repair
    108220608
   03420 Nucleotide excision repair
    108220608
   03430 Mismatch repair
    108220608
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dcr03032]
    108220608
   03036 Chromosome and associated proteins [BR:dcr03036]
    108220608
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108220608
DNA replication proteins [BR:dcr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108220608
  DNA Replication Termination Factors
   ELG1-RFC complex
    108220608
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108220608
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108220608
  Check point factors
   HRAD17(Rad24)-RFC complex
    108220608
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 Mg_chelatase AAA_14 SLFN-g3_helicase AAA_5 AAA_11 AAA_24 AAA_2 AAA_assoc_2 DUF3802 nSTAND3 ResIII AAA_19 PhoH AAA_30 AAA_28 DUF815 AAA_7 DNAX_ATPase_lid NPHP3_N AAA_25 TIP49 RNA_helicase Parvo_NS1 bpMoxR AAA_18 AAA_17 IstB_IS21 ATPase_2 NB-ARC
Other DBs
NCBI-GeneID: 108220608
NCBI-ProteinID: XP_017249904
UniProt: A0AAF1B2I8
LinkDB
Position
5:complement(39244075..39253075)
AA seq 341 aa
MAPLLQSSQPWVEKYRPRQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHELYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTQRHGNYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTDEIMND
RIAYICSAEGLDLDPEALSTLSSISQGDLRRAITYLQGAARLFGSSILSTDLVTVSGVIP
EEVVQALYSTCKSGNFELAEKEVSNVIAEGYPVSQIISQLFDLIVGLDDVSDEQKARIFK
KMGEADKCLIDGADEYLQLLDVASNAMRALCNMPLEFPSEF
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccattgttgcaaagctctcagccttgggtcgaaaaatatcgacctaggcaagtc
aaggacgtagctcaccaagacgaggtcgttcgtgtcctcactaacactctcgaaaccgct
aattgcccacacatgctgttttatgggccacctggaactggaaaaactactactgctctt
gccattgctcatgagctttatggacctgaactttacaagtctagggtgctggagcttaat
gcgagtgacgatcgtggaatcaatgtagttcgcacaaaaataaaaaattttgctgctgta
gctgtaggaactcagcgtcatgggaattacccttgccccccttacaaaataatcatcctg
gatgaggcagattccatgaccgaagatgcgcagaatgccttgcgccgaaccatggaaaca
tactccaaagttacaagattttttttcatttgcaattacatcagcagaatcattgagccg
cttgcttctagatgtgcaaagtttagatttaagccacttactgatgaaataatgaatgat
cgtatagcatacatatgcagtgcggaaggccttgatctggatccagaggctctttcgacc
ttgagttctatctctcaaggtgatttacgccgggcaataacctacctgcagggagctgct
cgcttatttggatcttcaattttatccacggacttggttacagtatctggggtcatccca
gaggaagttgtacaggctctttattccacttgcaaaagtggtaactttgaattagccgag
aaggaagtcagtaatgtaattgcagagggatatccagtttctcagataatttctcagttg
tttgacctcattgttggactggatgatgtatcagatgagcagaaagcaagaatatttaag
aaaatgggtgaagcagataagtgtctcattgatggagcagacgagtacttgcagctgttg
gatgtggccagcaatgcaatgcgagcactatgtaacatgccactagaatttccttctgag
ttctaa

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