KEGG   Daucus carota (carrot): 108220612
Entry
108220612         CDS       T05350                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4 isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03020  RNA polymerase
dcr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108220612
  09124 Replication and repair
   03420 Nucleotide excision repair
    108220612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dcr03021]
    108220612
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108220612
Transcription machinery [BR:dcr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     108220612
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108220612
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 108220612
NCBI-ProteinID: XP_017249909
LinkDB
Position
5:42053984..42060515
AA seq 195 aa
MGDKAGGKGGAKSALKTPLSSGFELNNGSTKSRKGMNVQFEFEDRGGKRDKAANGGKNPV
KKPTPPLQLRVEQELPENVTCLMDCEAAQVLEGIQEQMVVLSEDPAIKIPASFDKGLQRA
KRGNNYTSLQSVQEVLQNLKKHGVADSELCLIANIHPESADEVFSLVPSLKGKKNKLLEP
LNSALDELSKIECSA
NT seq 588 nt   +upstreamnt  +downstreamnt
atgggtgataaagcaggaggaaaagggggtgctaaatcagctctcaaaaccccattgtct
tcaggttttgagctgaacaacggttcaacaaaatctaggaaaggaatgaatgttcagttt
gaatttgaagatcgtgggggaaagagagataaggctgcaaatggtggtaagaacccagtg
aagaaaccaacacctcctttgcagcttagagttgagcaggagctcccggagaatgttaca
tgtctgatggactgtgaagctgcccaagttttagaagggattcaagagcagatggttgtg
ctctctgaagatccagctattaaaatcccagcttcatttgacaagggactgcagcgtgcc
aagagaggcaataattatacaagtttacagtctgttcaagaagtacttcaaaatctgaag
aaacacggtgttgctgatagtgaattatgcttgattgccaatattcacccagaatctgct
gatgaggtcttttctcttgttccatccttgaagggaaagaaaaacaagctgctggagccc
ctcaattctgcattggatgaattatcaaaaatagaatgttcagcataa

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